Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s30.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4460.97 46351.71 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3644.27 37865.79 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 2991.62 31084.43 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 2517.12 26154.14 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Rnr2 ENSMUSG00000064339 2431.57 25265.23 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
6. mt-Nd1 ENSMUSG00000064341 2362.78 24550.47 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co2 ENSMUSG00000064354 2198.74 22846.01 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1305.31 13562.82 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1216.23 12637.24 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. H19 ENSMUSG00000000031 1012.49 10520.28 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Nd3 ENSMUSG00000064360 950.76 9878.87 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd5 ENSMUSG00000064367 924.30 9603.94 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. mt-Co3 ENSMUSG00000064358 764.66 7945.20 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Actb ENSMUSG00000029580 723.21 7514.51 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Igf2 ENSMUSG00000048583 703.81 7312.94 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Mdk ENSMUSG00000027239 532.71 5535.12 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Eef1a1 ENSMUSG00000037742 454.21 4719.47 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Gm13340 ENSMUSG00000083563 445.39 4627.83 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hmga2 ENSMUSG00000056758 332.50 3454.84 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Npm1 ENSMUSG00000057113 281.35 2923.37 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Pkm ENSMUSG00000032294 263.71 2740.08 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
22. Nedd4 ENSMUSG00000032216 252.24 2620.90 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. Tuba1b ENSMUSG00000023004 237.25 2465.15 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. mt-Rnr1 ENSMUSG00000064337 236.37 2456.00 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
25. Tubb5 ENSMUSG00000001525 226.66 2355.11 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Myl6 ENSMUSG00000090841 211.67 2199.36 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
27. Cfl1 ENSMUSG00000056201 209.03 2171.93 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Cdkn1c ENSMUSG00000037664 207.26 2153.54 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
29. Ubb ENSMUSG00000019505 206.38 2144.39 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Rpsa ENSMUSG00000032518 205.50 2135.25 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
31. Hbb-y ENSMUSG00000052187 193.15 2006.93 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
32. Gm10800 ENSMUSG00000075014 187.86 1951.96 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
33. Hsp90ab1 ENSMUSG00000023944 180.80 1878.60 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Eif4g2 ENSMUSG00000005610 176.39 1832.78 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Tpt1 ENSMUSG00000060126 166.69 1731.99 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
36. Grb10 ENSMUSG00000020176 163.16 1695.31 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
37. Hnrnpc ENSMUSG00000060373 160.52 1667.88 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
38. Col3a1 ENSMUSG00000026043 149.05 1548.70 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
39. Peg3 ENSMUSG00000002265 148.17 1539.56 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
40. Rpl4 ENSMUSG00000032399 147.29 1530.42 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Rpl23 ENSMUSG00000071415 143.76 1493.74 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. U2af2 ENSMUSG00000030435 134.94 1402.09 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
43. Eef1b2 ENSMUSG00000025967 134.06 1392.95 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Actc1 ENSMUSG00000068614 133.18 1383.81 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
45. Ywhab ENSMUSG00000018326 133.18 1383.81 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
46. Ndufa12 ENSMUSG00000020022 132.29 1374.56 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
47. Acta2 ENSMUSG00000035783 131.41 1365.42 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
48. Pbx1 ENSMUSG00000052534 131.41 1365.42 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
49. Atp5g3 ENSMUSG00000018770 129.65 1347.13 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
50. Eif5a ENSMUSG00000078812 129.65 1347.13 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
51. Hba-a1 ENSMUSG00000069919 128.77 1337.98 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
52. Chchd2 ENSMUSG00000070493 127.88 1328.74 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
53. Ybx1 ENSMUSG00000028639 127.00 1319.59 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
54. Ago2 ENSMUSG00000036698 123.47 1282.92 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
55. Gm17132 ENSMUSG00000061331 122.59 1273.77 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
56. Banf1 ENSMUSG00000024844 121.71 1264.63 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
57. Fkbp1a ENSMUSG00000032966 121.71 1264.63 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
58. Rpl18a ENSMUSG00000045128 117.30 1218.81 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
59. Crabp1 ENSMUSG00000032291 116.42 1209.66 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
60. Hba-x ENSMUSG00000055609 116.42 1209.66 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
61. Rps26 ENSMUSG00000025362 112.01 1163.84 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
62. Rps4x ENSMUSG00000031320 112.01 1163.84 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
63. Ran ENSMUSG00000029430 110.25 1145.55 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
64. Set ENSMUSG00000054766 110.25 1145.55 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
65. Paics ENSMUSG00000029247 108.48 1127.16 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
66. Hsp90aa1 ENSMUSG00000021270 104.95 1090.48 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
67. Rps5 ENSMUSG00000012848 104.95 1090.48 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
68. Cdk4 ENSMUSG00000006728 102.31 1063.05 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
69. Rps20 ENSMUSG00000028234 101.43 1053.91 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
70. Lamp1 ENSMUSG00000031447 99.66 1035.52 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
71. Adprh ENSMUSG00000002844 97.02 1008.09 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
72. Malat1 ENSMUSG00000092341 97.02 1008.09 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
73. Hmgn1 ENSMUSG00000040681 96.13 998.84 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
74. Cox8a ENSMUSG00000035885 94.37 980.55 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
75. Rpl41 ENSMUSG00000093674 94.37 980.55 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
76. Wbp5 94.37 980.55 WW domain binding protein 5
77. Rrm2 ENSMUSG00000020649 93.49 971.41 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
78. Tuba1a ENSMUSG00000072235 93.49 971.41 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
79. Tecr ENSMUSG00000031708 92.61 962.26 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
80. Trim28 ENSMUSG00000005566 92.61 962.26 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
81. Gm5805 ENSMUSG00000061848 91.72 953.02 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
82. Ngfrap1 90.84 943.87 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
83. Hnrnpa2b1 ENSMUSG00000004980 89.08 925.59 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
84. Tpm4 ENSMUSG00000031799 86.43 898.05 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
85. Rplp1 ENSMUSG00000007892 85.55 888.91 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
86. Ddx5 ENSMUSG00000020719 83.79 870.62 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
87. Tmpo ENSMUSG00000019961 82.02 852.23 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
88. Igfbp4 ENSMUSG00000017493 81.14 843.09 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
89. Caprin1 ENSMUSG00000027184 80.26 833.94 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
90. Hspe1 ENSMUSG00000073676 80.26 833.94 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
91. Pcbp1 ENSMUSG00000051695 79.38 824.80 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
92. Atxn7l3b ENSMUSG00000074748 78.49 815.55 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
93. Col1a1 ENSMUSG00000001506 77.61 806.41 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
94. Meg3 ENSMUSG00000021268 77.61 806.41 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
95. Pabpc1 ENSMUSG00000022283 76.73 797.26 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
96. Tmsb4x ENSMUSG00000049775 76.73 797.26 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
97. Ywhaz ENSMUSG00000022285 75.85 788.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
98. Scd2 ENSMUSG00000025203 74.97 778.98 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
99. Anp32b ENSMUSG00000028333 74.08 769.73 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
100. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 74.08 769.73 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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