Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s29.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4907.18 50979.84 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3911.64 40637.35 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 3040.66 31588.89 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Rnr2 ENSMUSG00000064339 2874.89 29866.73 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
5. mt-Nd1 ENSMUSG00000064341 2568.07 26679.23 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2469.16 25651.67 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2306.14 23958.09 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1684.27 17497.59 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1230.00 12778.26 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. H19 ENSMUSG00000000031 1151.24 11960.03 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Nd5 ENSMUSG00000064367 1073.39 11151.26 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Nd3 ENSMUSG00000064360 800.46 8315.84 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Mdk ENSMUSG00000027239 676.82 7031.37 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Igf2 ENSMUSG00000048583 638.36 6631.81 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. mt-Co3 ENSMUSG00000064358 618.21 6422.48 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Actb ENSMUSG00000029580 601.72 6251.16 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Gm13340 ENSMUSG00000083563 450.60 4681.20 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Eef1a1 ENSMUSG00000037742 404.81 4205.50 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Hmga2 ENSMUSG00000056758 384.66 3996.17 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. mt-Rnr1 ENSMUSG00000064337 370.92 3853.42 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
21. Rpsa ENSMUSG00000032518 249.11 2587.96 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Npm1 ENSMUSG00000057113 238.12 2473.79 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Nedd4 ENSMUSG00000032216 237.21 2464.33 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Tuba1b ENSMUSG00000023004 199.66 2074.23 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Ubb ENSMUSG00000019505 198.74 2064.68 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
26. Hsp90ab1 ENSMUSG00000023944 196.91 2045.66 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
27. Cfl1 ENSMUSG00000056201 184.09 1912.48 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Eif4g2 ENSMUSG00000005610 184.09 1912.48 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
29. Myl6 ENSMUSG00000090841 179.51 1864.90 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
30. Pbx1 ENSMUSG00000052534 171.27 1779.29 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
31. Rpl4 ENSMUSG00000032399 156.61 1626.99 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Grb10 ENSMUSG00000020176 153.86 1598.42 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
33. Hnrnpc ENSMUSG00000060373 153.86 1598.42 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
34. Tubb5 ENSMUSG00000001525 153.86 1598.42 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
35. Cdkn1c ENSMUSG00000037664 152.03 1579.41 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
36. Gm10800 ENSMUSG00000075014 152.03 1579.41 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
37. Pkm ENSMUSG00000032294 150.20 1560.40 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
38. Tpt1 ENSMUSG00000060126 150.20 1560.40 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Col3a1 ENSMUSG00000026043 145.62 1512.82 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
40. Malat1 ENSMUSG00000092341 141.96 1474.80 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
41. U2af2 ENSMUSG00000030435 141.96 1474.80 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
42. Set ENSMUSG00000054766 136.46 1417.66 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
43. Ago2 ENSMUSG00000036698 134.63 1398.65 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
44. Eef1b2 ENSMUSG00000025967 133.72 1389.19 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
45. Rrm2 ENSMUSG00000020649 133.72 1389.19 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
46. Peg3 ENSMUSG00000002265 132.80 1379.64 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
47. Chchd2 ENSMUSG00000070493 130.05 1351.07 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
48. Crabp1 ENSMUSG00000032291 128.22 1332.06 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
49. Rpl23 ENSMUSG00000071415 127.30 1322.50 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
50. Atp5g3 ENSMUSG00000018770 125.47 1303.49 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
51. Banf1 ENSMUSG00000024844 124.56 1294.03 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
52. Ywhab ENSMUSG00000018326 122.73 1275.02 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Hbb-y ENSMUSG00000052187 120.89 1255.91 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
54. Hsp90aa1 ENSMUSG00000021270 120.89 1255.91 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
55. Ybx1 ENSMUSG00000028639 120.89 1255.91 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
56. Eif5a ENSMUSG00000078812 114.48 1189.31 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
57. Meg3 ENSMUSG00000021268 114.48 1189.31 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
58. Actc1 ENSMUSG00000068614 111.74 1160.85 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
59. Fkbp1a ENSMUSG00000032966 108.07 1122.72 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
60. Rps20 ENSMUSG00000028234 105.32 1094.15 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
61. Cdk4 ENSMUSG00000006728 104.41 1084.70 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
62. Paics ENSMUSG00000029247 103.49 1075.14 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
63. Pcbp1 ENSMUSG00000051695 97.08 1008.55 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
64. Rpl18a ENSMUSG00000045128 97.08 1008.55 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
65. Acta2 ENSMUSG00000035783 96.17 999.09 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
66. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 96.17 999.09 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
67. Trim28 ENSMUSG00000005566 94.33 979.98 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
68. Pabpc1 ENSMUSG00000022283 93.42 970.52 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
69. Col1a2 ENSMUSG00000029661 92.50 960.97 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
70. Cox8a ENSMUSG00000035885 91.59 951.51 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
71. Gm14303 ENSMUSG00000081344 91.59 951.51 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
72. Morf4l2 ENSMUSG00000031422 91.59 951.51 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
73. Gm17132 ENSMUSG00000061331 89.75 932.40 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
74. Ngfrap1 87.01 903.93 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
75. Ran ENSMUSG00000029430 87.01 903.93 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
76. Hmgn1 ENSMUSG00000040681 86.09 894.37 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
77. Ndufa12 ENSMUSG00000020022 84.26 875.36 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
78. Tuba1a ENSMUSG00000072235 83.34 865.80 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
79. Rps5 ENSMUSG00000012848 82.43 856.35 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
80. Ywhaz ENSMUSG00000022285 82.43 856.35 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
81. Ywhae ENSMUSG00000020849 81.51 846.79 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
82. Wbp5 80.60 837.34 WW domain binding protein 5
83. Morf4l1 ENSMUSG00000062270 79.68 827.78 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
84. Rps26 ENSMUSG00000025362 79.68 827.78 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
85. Son ENSMUSG00000022961 79.68 827.78 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
86. Gm5805 ENSMUSG00000061848 77.85 808.77 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
87. Tmsb4x ENSMUSG00000049775 77.85 808.77 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
88. Ccnd2 ENSMUSG00000000184 76.93 799.21 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
89. Kpnb1 ENSMUSG00000001440 76.02 789.76 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
90. Scd2 ENSMUSG00000025203 76.02 789.76 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
91. Gm26924 Gm26924 75.10 780.20
92. H3f3b ENSMUSG00000016559 75.10 780.20 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
93. Marcks ENSMUSG00000069662 75.10 780.20 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
94. Top1 ENSMUSG00000070544 75.10 780.20 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
95. Cdc42 ENSMUSG00000006699 74.18 770.64 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
96. Hnrnpa2b1 ENSMUSG00000004980 74.18 770.64 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
97. Rps3a1 ENSMUSG00000028081 74.18 770.64 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
98. Tmpo ENSMUSG00000019961 74.18 770.64 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
99. Anp32b ENSMUSG00000028333 73.27 761.19 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
100. Ddx39b ENSMUSG00000019432 72.35 751.63 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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