Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s27.

Sample reads: 96,259. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4157.12 43187.94 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3418.13 35510.64 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 2816.24 29257.66 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd1 ENSMUSG00000064341 2418.02 25120.59 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Atp6 ENSMUSG00000064357 2378.85 24713.66 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Co2 ENSMUSG00000064354 2286.15 23750.60 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd4 ENSMUSG00000064363 2142.53 22258.55 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
8. mt-Nd2 ENSMUSG00000064345 1216.84 12641.64 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 964.86 10023.84 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. H19 ENSMUSG00000000031 959.64 9969.61 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Nd5 ENSMUSG00000064367 896.97 9318.54 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Nd3 ENSMUSG00000064360 870.85 9047.18 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 793.82 8246.92 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Igf2 ENSMUSG00000048583 716.79 7446.67 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. mt-Co3 ENSMUSG00000064358 638.45 6632.80 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Mdk ENSMUSG00000027239 614.95 6388.66 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Gm13340 ENSMUSG00000083563 415.19 4313.37 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Eef1a1 ENSMUSG00000037742 411.27 4272.65 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Hmga2 ENSMUSG00000056758 310.74 3228.25 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Tuba1b ENSMUSG00000023004 291.15 3024.73 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Npm1 ENSMUSG00000057113 287.24 2984.11 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Gm10800 ENSMUSG00000075014 261.13 2712.86 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
23. Nedd4 ENSMUSG00000032216 257.21 2672.13 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Tubb5 ENSMUSG00000001525 242.85 2522.95 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Rpsa ENSMUSG00000032518 224.57 2333.04 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Pkm ENSMUSG00000032294 223.26 2319.43 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Hbb-y ENSMUSG00000052187 218.04 2265.20 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
28. Ubb ENSMUSG00000019505 212.82 2210.97 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Cdkn1c ENSMUSG00000037664 210.21 2183.85 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
30. mt-Rnr1 ENSMUSG00000064337 210.21 2183.85 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
31. Peg3 ENSMUSG00000002265 203.68 2116.01 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
32. Grb10 ENSMUSG00000020176 201.07 2088.90 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
33. Cfl1 ENSMUSG00000056201 198.46 2061.78 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
34. Tpt1 ENSMUSG00000060126 181.48 1885.38 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Eif4g2 ENSMUSG00000005610 172.34 1790.42 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Chchd2 ENSMUSG00000070493 171.04 1776.92 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Hsp90ab1 ENSMUSG00000023944 171.04 1776.92 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Atp5g3 ENSMUSG00000018770 165.81 1722.58 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
39. Hnrnpc ENSMUSG00000060373 164.51 1709.08 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
40. Banf1 ENSMUSG00000024844 157.98 1641.24 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
41. Myl6 ENSMUSG00000090841 157.98 1641.24 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
42. Malat1 ENSMUSG00000092341 156.68 1627.73 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
43. Ybx1 ENSMUSG00000028639 152.76 1587.01 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
44. Rpl4 ENSMUSG00000032399 144.92 1505.56 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Rpl23 ENSMUSG00000071415 143.62 1492.06 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Hba-a1 ENSMUSG00000069919 139.70 1451.33 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
47. U2af2 ENSMUSG00000030435 139.70 1451.33 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
48. Eif5a ENSMUSG00000078812 138.40 1437.82 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
49. Paics ENSMUSG00000029247 138.40 1437.82 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
50. Acta2 ENSMUSG00000035783 137.09 1424.22 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
51. Actc1 ENSMUSG00000068614 135.79 1410.71 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
52. Col3a1 ENSMUSG00000026043 133.17 1383.49 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
53. Set ENSMUSG00000054766 130.56 1356.38 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
54. Pbx1 ENSMUSG00000052534 127.95 1329.26 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
55. Ago2 ENSMUSG00000036698 126.65 1315.76 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
56. Fkbp1a ENSMUSG00000032966 126.65 1315.76 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Ndufa12 ENSMUSG00000020022 126.65 1315.76 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
58. Crabp1 ENSMUSG00000032291 125.34 1302.15 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
59. Rpl18a ENSMUSG00000045128 125.34 1302.15 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
60. Rrm2 ENSMUSG00000020649 125.34 1302.15 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
61. Ngfrap1 124.03 1288.54 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
62. Rps20 ENSMUSG00000028234 121.42 1261.42 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
63. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 121.42 1261.42 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
64. Ywhab ENSMUSG00000018326 118.81 1234.31 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
65. Eef1b2 ENSMUSG00000025967 113.59 1180.08 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
66. Gm17132 ENSMUSG00000061331 113.59 1180.08 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
67. Rps4x ENSMUSG00000031320 112.28 1166.47 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
68. Marcks ENSMUSG00000069662 105.76 1098.73 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
69. Trim28 ENSMUSG00000005566 105.76 1098.73 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
70. Pabpc1 ENSMUSG00000022283 104.45 1085.12 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
71. Rps26 ENSMUSG00000025362 103.14 1071.51 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
72. Rps5 ENSMUSG00000012848 103.14 1071.51 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
73. Col1a2 ENSMUSG00000029661 99.23 1030.89 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
74. Cox8a ENSMUSG00000035885 97.92 1017.28 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
75. Tecr ENSMUSG00000031708 96.62 1003.78 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
76. Hspe1 ENSMUSG00000073676 95.31 990.17 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
77. Pcbp1 ENSMUSG00000051695 95.31 990.17 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
78. Hsp90aa1 ENSMUSG00000021270 94.01 976.66 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
79. Ran ENSMUSG00000029430 92.70 963.05 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
80. Anp32b ENSMUSG00000028333 91.39 949.44 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
81. Hba-x ENSMUSG00000055609 91.39 949.44 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
82. Hoxc8 ENSMUSG00000001657 91.39 949.44 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
83. Rps9 ENSMUSG00000006333 91.39 949.44 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
84. Gm5805 ENSMUSG00000061848 90.09 935.94 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
85. Tuba1a ENSMUSG00000072235 88.78 922.33 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
86. Lamp1 ENSMUSG00000031447 87.48 908.82 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
87. H3f3b ENSMUSG00000016559 86.17 895.21 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
88. Sub1 ENSMUSG00000022205 86.17 895.21 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
89. Gm14303 ENSMUSG00000081344 84.87 881.71 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
90. Hmgn1 ENSMUSG00000040681 84.87 881.71 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
91. Ddx39b ENSMUSG00000019432 83.56 868.10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
92. Tpm1 ENSMUSG00000032366 83.56 868.10 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
93. Tpm4 ENSMUSG00000031799 83.56 868.10 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
94. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 82.25 854.49 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
95. Ccnd2 ENSMUSG00000000184 80.95 840.98 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
96. Cdk4 ENSMUSG00000006728 79.64 827.37 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
97. Rpl26 ENSMUSG00000060938 79.64 827.37 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
98. 2810417H13Rik 78.34 813.87 RIKEN cDNA 2810417H13 gene
99. Meg3 ENSMUSG00000021268 78.34 813.87 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
100. Plagl1 ENSMUSG00000019817 78.34 813.87 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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