Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s26.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4057.57 42156.83 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3932.34 40855.74 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 3222.23 33477.92 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Rnr2 ENSMUSG00000064339 2951.93 30669.59 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
5. mt-Nd1 ENSMUSG00000064341 2840.45 29511.35 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 2333.44 24243.68 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 2194.48 22799.93 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1447.71 15041.24 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 1171.30 12169.43 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. H19 ENSMUSG00000000031 1038.44 10789.05 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Co1 ENSMUSG00000064351 988.05 10265.52 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. mt-Nd3 ENSMUSG00000064360 945.29 9821.26 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Igf2 ENSMUSG00000048583 734.55 7631.74 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Mdk ENSMUSG00000027239 726.91 7552.36 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Actb ENSMUSG00000029580 688.73 7155.68 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. mt-Co3 ENSMUSG00000064358 560.45 5822.89 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Gm13340 ENSMUSG00000083563 436.76 4537.79 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Eef1a1 ENSMUSG00000037742 395.52 4109.32 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. mt-Rnr1 ENSMUSG00000064337 366.51 3807.92 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Hbb-y ENSMUSG00000052187 317.64 3300.18 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. Gm10800 ENSMUSG00000075014 303.90 3157.42 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
22. Hmga2 ENSMUSG00000056758 279.46 2903.50 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Npm1 ENSMUSG00000057113 270.30 2808.33 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Tuba1b ENSMUSG00000023004 262.67 2729.06 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Tubb5 ENSMUSG00000001525 247.39 2570.30 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Eif4g2 ENSMUSG00000005610 242.81 2522.72 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
27. Pkm ENSMUSG00000032294 226.01 2348.17 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Hba-a1 ENSMUSG00000069919 224.49 2332.38 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
29. Nedd4 ENSMUSG00000032216 224.49 2332.38 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
30. Rpsa ENSMUSG00000032518 219.91 2284.79 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
31. Hba-x ENSMUSG00000055609 203.11 2110.25 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
32. Cfl1 ENSMUSG00000056201 184.78 1919.80 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
33. Rpl4 ENSMUSG00000032399 177.15 1840.53 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Ubb ENSMUSG00000019505 174.09 1808.74 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Banf1 ENSMUSG00000024844 166.46 1729.47 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
36. Rpl18a ENSMUSG00000045128 166.46 1729.47 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
37. Rpl23 ENSMUSG00000071415 164.93 1713.57 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
38. Peg3 ENSMUSG00000002265 163.40 1697.67 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
39. Grb10 ENSMUSG00000020176 161.88 1681.88 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
40. Cdkn1c ENSMUSG00000037664 160.35 1665.98 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
41. Hsp90ab1 ENSMUSG00000023944 157.29 1634.19 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
42. Eif5a ENSMUSG00000078812 154.24 1602.50 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
43. Set ENSMUSG00000054766 154.24 1602.50 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
44. Hnrnpc ENSMUSG00000060373 151.19 1570.81 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Chchd2 ENSMUSG00000070493 146.60 1523.13 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Pbx1 ENSMUSG00000052534 146.60 1523.13 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
47. Tpt1 ENSMUSG00000060126 145.08 1507.33 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
48. Atp5g3 ENSMUSG00000018770 137.44 1427.96 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
49. Malat1 ENSMUSG00000092341 131.33 1364.48 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
50. Paics ENSMUSG00000029247 131.33 1364.48 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
51. U2af2 ENSMUSG00000030435 126.75 1316.89 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
52. Eef1b2 ENSMUSG00000025967 125.22 1301.00 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
53. Ybx1 ENSMUSG00000028639 123.70 1285.20 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
54. Ywhab ENSMUSG00000018326 122.17 1269.31 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
55. Ndufa12 ENSMUSG00000020022 114.53 1189.93 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
56. Rps20 ENSMUSG00000028234 114.53 1189.93 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
57. Trim28 ENSMUSG00000005566 113.01 1174.14 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
58. Actc1 ENSMUSG00000068614 109.95 1142.34 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
59. Fkbp1a ENSMUSG00000032966 109.95 1142.34 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
60. Gm14303 ENSMUSG00000081344 106.90 1110.66 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
61. Hbb-bh1 ENSMUSG00000052217 106.90 1110.66 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
62. Ago2 ENSMUSG00000036698 105.37 1094.76 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
63. Hsp90aa1 ENSMUSG00000021270 105.37 1094.76 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
64. Pcbp1 ENSMUSG00000051695 105.37 1094.76 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
65. Rps26 ENSMUSG00000025362 105.37 1094.76 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
66. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 103.84 1078.86 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
67. Rps4x ENSMUSG00000031320 102.32 1063.07 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
68. Col3a1 ENSMUSG00000026043 100.79 1047.18 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
69. Pabpc1 ENSMUSG00000022283 100.79 1047.18 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
70. Ran ENSMUSG00000029430 99.26 1031.28 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
71. Marcks ENSMUSG00000069662 96.21 999.59 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
72. Rps5 ENSMUSG00000012848 96.21 999.59 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
73. Ccnd2 ENSMUSG00000000184 94.68 983.69 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
74. Anp32b ENSMUSG00000028333 93.15 967.80 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
75. Cdk4 ENSMUSG00000006728 93.15 967.80 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
76. Cox8a ENSMUSG00000035885 93.15 967.80 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
77. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 91.63 952.01 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
78. Tpm4 ENSMUSG00000031799 91.63 952.01 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
79. Col1a2 ENSMUSG00000029661 90.10 936.11 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
80. Gm5805 ENSMUSG00000061848 90.10 936.11 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
81. Hba-a2 ENSMUSG00000069917 88.57 920.21 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
82. Sub1 ENSMUSG00000022205 88.57 920.21 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
83. Acta2 ENSMUSG00000035783 87.05 904.42 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
84. Meg3 ENSMUSG00000021268 87.05 904.42 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
85. Myl6 ENSMUSG00000090841 87.05 904.42 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
86. Fscn1 ENSMUSG00000029581 85.52 888.53 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
87. Gm17132 ENSMUSG00000061331 85.52 888.53 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
88. Hoxc8 ENSMUSG00000001657 85.52 888.53 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
89. Hnrnpa2b1 ENSMUSG00000004980 82.46 856.73 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
90. Rplp1 ENSMUSG00000007892 82.46 856.73 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
91. Rrm2 ENSMUSG00000020649 82.46 856.73 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
92. Tmsb4x ENSMUSG00000049775 82.46 856.73 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
93. Crabp1 ENSMUSG00000032291 80.94 840.94 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
94. Lamp1 ENSMUSG00000031447 80.94 840.94 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
95. Tpm1 ENSMUSG00000032366 80.94 840.94 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
96. Rps3a1 ENSMUSG00000028081 79.41 825.04 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
97. Ddx39b ENSMUSG00000019432 77.88 809.15 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
98. Son ENSMUSG00000022961 77.88 809.15 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
99. Top2a ENSMUSG00000020914 77.88 809.15 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
100. Tuba1a ENSMUSG00000072235 77.88 809.15 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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