Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s25.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3838.07 39880.35 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 3739.66 38857.80 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Cytb ENSMUSG00000064370 2531.56 26304.76 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd4 ENSMUSG00000064363 2215.97 23025.55 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2076.83 21579.78 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1917.34 19922.56 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 1788.38 18582.58 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1147.01 11918.27 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. Igf2 ENSMUSG00000048583 1004.48 10437.28 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
10. H19 ENSMUSG00000000031 973.94 10119.95 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Nd5 ENSMUSG00000064367 851.77 8850.51 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Co1 ENSMUSG00000064351 804.26 8356.85 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
13. mt-Nd3 ENSMUSG00000064360 770.33 8004.29 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Mdk ENSMUSG00000027239 729.61 7581.18 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Actb ENSMUSG00000029580 712.64 7404.85 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. mt-Co3 ENSMUSG00000064358 573.50 5959.08 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Hmga2 ENSMUSG00000056758 369.89 3843.43 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. Eef1a1 ENSMUSG00000037742 366.50 3808.20 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. mt-Rnr1 ENSMUSG00000064337 312.20 3243.99 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Gm13340 ENSMUSG00000083563 268.09 2785.65 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Tuba1b ENSMUSG00000023004 268.09 2785.65 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Gm10800 ENSMUSG00000075014 264.69 2750.32 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
23. Nedd4 ENSMUSG00000032216 247.73 2574.10 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Npm1 ENSMUSG00000057113 247.73 2574.10 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Rpsa ENSMUSG00000032518 244.33 2538.77 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Set ENSMUSG00000054766 213.79 2221.43 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
27. Cfl1 ENSMUSG00000056201 207.00 2150.88 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Eif4g2 ENSMUSG00000005610 203.61 2115.66 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
29. Grb10 ENSMUSG00000020176 200.22 2080.43 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
30. Hsp90ab1 ENSMUSG00000023944 193.43 2009.88 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Tubb5 ENSMUSG00000001525 190.04 1974.65 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
32. Malat1 ENSMUSG00000092341 186.64 1939.33 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
33. Ubb ENSMUSG00000019505 183.25 1904.10 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Hbb-y ENSMUSG00000052187 179.86 1868.88 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
35. Gm17132 ENSMUSG00000061331 173.07 1798.32 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
36. Ago2 ENSMUSG00000036698 169.68 1763.10 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
37. Cdkn1c ENSMUSG00000037664 169.68 1763.10 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
38. Peg3 ENSMUSG00000002265 169.68 1763.10 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
39. Pkm ENSMUSG00000032294 162.89 1692.55 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
40. Hnrnpc ENSMUSG00000060373 159.50 1657.32 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
41. Ybx1 ENSMUSG00000028639 159.50 1657.32 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
42. Pabpc1 ENSMUSG00000022283 156.10 1621.99 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
43. Pbx1 ENSMUSG00000052534 152.71 1586.77 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
44. Chchd2 ENSMUSG00000070493 145.92 1516.22 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
45. Tpt1 ENSMUSG00000060126 145.92 1516.22 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
46. Rpl18a ENSMUSG00000045128 142.53 1480.99 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
47. Hsp90aa1 ENSMUSG00000021270 139.13 1445.66 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
48. Ndufa12 ENSMUSG00000020022 139.13 1445.66 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
49. Hba-a1 ENSMUSG00000069919 135.74 1410.44 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
50. Rpl23 ENSMUSG00000071415 135.74 1410.44 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
51. Rps26 ENSMUSG00000025362 135.74 1410.44 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Ccnd2 ENSMUSG00000000184 132.35 1375.21 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
53. Hoxc8 ENSMUSG00000001657 128.95 1339.88 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
54. Rpl4 ENSMUSG00000032399 128.95 1339.88 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
55. Rps20 ENSMUSG00000028234 128.95 1339.88 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
56. Atp5g3 ENSMUSG00000018770 122.17 1269.44 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
57. Col3a1 ENSMUSG00000026043 118.77 1234.11 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
58. Trim28 ENSMUSG00000005566 118.77 1234.11 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
59. Ran ENSMUSG00000029430 115.38 1198.88 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
60. Rrm2 ENSMUSG00000020649 115.38 1198.88 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
61. Wbp5 115.38 1198.88 WW domain binding protein 5
62. Cdk4 ENSMUSG00000006728 111.99 1163.66 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
63. Paics ENSMUSG00000029247 111.99 1163.66 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
64. Pcbp1 ENSMUSG00000051695 111.99 1163.66 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
65. Myl6 ENSMUSG00000090841 108.59 1128.33 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
66. Rps5 ENSMUSG00000012848 108.59 1128.33 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
67. Top1 ENSMUSG00000070544 108.59 1128.33 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
68. Hspe1 ENSMUSG00000073676 105.20 1093.10 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
69. Anp32b ENSMUSG00000028333 101.81 1057.88 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
70. Banf1 ENSMUSG00000024844 101.81 1057.88 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
71. Meg3 ENSMUSG00000021268 101.81 1057.88 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
72. Rps9 ENSMUSG00000006333 101.81 1057.88 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
73. Tcf4 ENSMUSG00000053477 101.81 1057.88 transcription factor 4 [Source:MGI Symbol;Acc:MGI:98506]
74. Tmsb4x ENSMUSG00000049775 101.81 1057.88 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
75. Lamp1 ENSMUSG00000031447 98.41 1022.55 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
76. Marcks ENSMUSG00000069662 98.41 1022.55 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
77. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 98.41 1022.55 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
78. Srsf3 ENSMUSG00000071172 98.41 1022.55 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
79. U2af2 ENSMUSG00000030435 95.02 987.33 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
80. Ywhab ENSMUSG00000018326 95.02 987.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
81. Ddx39b ENSMUSG00000019432 91.62 952.00 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
82. Fscn1 ENSMUSG00000029581 91.62 952.00 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
83. Gm5805 ENSMUSG00000061848 91.62 952.00 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
84. Arpc2 ENSMUSG00000006304 88.23 916.77 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
85. Crabp1 ENSMUSG00000032291 88.23 916.77 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
86. Eif5a ENSMUSG00000078812 88.23 916.77 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
87. Igfbp5 ENSMUSG00000026185 88.23 916.77 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
88. Rpl32 ENSMUSG00000057841 88.23 916.77 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
89. 2810417H13Rik 84.84 881.55 RIKEN cDNA 2810417H13 gene
90. Cox8a ENSMUSG00000035885 84.84 881.55 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
91. Gm14303 ENSMUSG00000081344 84.84 881.55 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
92. Rps3a1 ENSMUSG00000028081 84.84 881.55 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
93. Tpm1 ENSMUSG00000032366 84.84 881.55 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
94. Eef1b2 ENSMUSG00000025967 81.44 846.22 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
95. Fkbp4 ENSMUSG00000030357 81.44 846.22 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
96. Hbb-bh1 ENSMUSG00000052217 81.44 846.22 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
97. Hnrnpa2b1 ENSMUSG00000004980 81.44 846.22 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
98. Mrfap1 ENSMUSG00000055302 81.44 846.22 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
99. Tcf12 ENSMUSG00000032228 81.44 846.22 transcription factor 12 [Source:MGI Symbol;Acc:MGI:101877]
100. Adprh ENSMUSG00000002844 78.05 811.00 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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