Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s24.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5301.41 55085.51 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 3870.17 40213.89 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. Ptma ENSMUSG00000026238 3071.93 31919.59 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2891.57 30045.52 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2427.29 25221.31 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2094.50 21763.38 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 1983.96 20614.79 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd5 ENSMUSG00000064367 1369.57 14230.83 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Nd2 ENSMUSG00000064345 1312.55 13638.35 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. H19 ENSMUSG00000000031 1037.94 10784.95 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Co1 ENSMUSG00000064351 990.23 10289.21 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. Igf2 ENSMUSG00000048583 813.36 8451.40 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. mt-Nd3 ENSMUSG00000064360 813.36 8451.40 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Actb ENSMUSG00000029580 751.69 7810.61 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Co3 ENSMUSG00000064358 643.48 6686.23 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Mdk ENSMUSG00000027239 563.19 5851.95 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Gm10800 ENSMUSG00000075014 551.55 5731.01 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
18. Hbb-y ENSMUSG00000052187 459.63 4775.89 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
19. mt-Rnr1 ENSMUSG00000064337 453.81 4715.42 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Gm13340 ENSMUSG00000083563 434.03 4509.89 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Eef1a1 ENSMUSG00000037742 402.61 4183.41 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
22. Hmga2 ENSMUSG00000056758 304.87 3167.82 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Npm1 ENSMUSG00000057113 269.96 2805.08 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Hba-a1 ENSMUSG00000069919 257.16 2672.08 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
25. Rpsa ENSMUSG00000032518 254.83 2647.87 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Nedd4 ENSMUSG00000032216 226.90 2357.66 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Cfl1 ENSMUSG00000056201 224.58 2333.55 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Tubb5 ENSMUSG00000001525 214.10 2224.66 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Pkm ENSMUSG00000032294 212.94 2212.60 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Peg3 ENSMUSG00000002265 200.14 2079.60 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
31. Hba-x ENSMUSG00000055609 198.98 2067.55 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
32. Set ENSMUSG00000054766 198.98 2067.55 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
33. Tuba1b ENSMUSG00000023004 182.69 1898.28 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
34. Ybx1 ENSMUSG00000028639 172.21 1789.39 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
35. Ubb ENSMUSG00000019505 167.56 1741.07 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
36. Chchd2 ENSMUSG00000070493 164.07 1704.81 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Eif4g2 ENSMUSG00000005610 164.07 1704.81 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Tpt1 ENSMUSG00000060126 164.07 1704.81 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Malat1 ENSMUSG00000092341 161.74 1680.60 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
40. Hsp90ab1 ENSMUSG00000023944 160.58 1668.54 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
41. Grb10 ENSMUSG00000020176 155.92 1620.12 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
42. Hnrnpc ENSMUSG00000060373 153.60 1596.02 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Rrm2 ENSMUSG00000020649 146.62 1523.49 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
44. Rpl4 ENSMUSG00000032399 144.29 1499.28 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Gm17132 ENSMUSG00000061331 143.12 1487.12 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
46. Rpl23 ENSMUSG00000071415 138.47 1438.80 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
47. Hsp90aa1 ENSMUSG00000021270 133.82 1390.49 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
48. Myl6 ENSMUSG00000090841 123.34 1281.59 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
49. Ywhab ENSMUSG00000018326 123.34 1281.59 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Atp5g3 ENSMUSG00000018770 122.18 1269.54 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
51. Pabpc1 ENSMUSG00000022283 119.85 1245.33 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
52. Rps20 ENSMUSG00000028234 116.36 1209.07 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
53. Banf1 ENSMUSG00000024844 114.03 1184.85 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
54. Eif5a ENSMUSG00000078812 114.03 1184.85 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
55. Rps26 ENSMUSG00000025362 114.03 1184.85 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
56. Ndufa12 ENSMUSG00000020022 111.71 1160.75 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
57. U2af2 ENSMUSG00000030435 110.54 1148.59 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
58. Col3a1 ENSMUSG00000026043 109.38 1136.54 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
59. Rpl18a ENSMUSG00000045128 108.22 1124.48 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
60. 2810417H13Rik 105.89 1100.27 RIKEN cDNA 2810417H13 gene
61. Gm14303 ENSMUSG00000081344 104.73 1088.22 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
62. Ccnd2 ENSMUSG00000000184 103.56 1076.06 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
63. Hba-a2 ENSMUSG00000069917 103.56 1076.06 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
64. Rps4x ENSMUSG00000031320 102.40 1064.01 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
65. Paics ENSMUSG00000029247 97.74 1015.59 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
66. Ago2 ENSMUSG00000036698 96.58 1003.54 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
67. Eef1b2 ENSMUSG00000025967 95.42 991.48 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
68. Fkbp1a ENSMUSG00000032966 94.25 979.33 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
69. Hbb-bh1 ENSMUSG00000052217 91.93 955.22 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
70. Wbp5 91.93 955.22 WW domain binding protein 5
71. Top2a ENSMUSG00000020914 90.76 943.06 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
72. Cdkn1c ENSMUSG00000037664 89.60 931.01 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
73. Pcbp1 ENSMUSG00000051695 89.60 931.01 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
74. Cd24a ENSMUSG00000047139 88.43 918.85 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
75. Hoxc8 ENSMUSG00000001657 87.27 906.80 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
76. Lamp1 ENSMUSG00000031447 87.27 906.80 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
77. Marcks ENSMUSG00000069662 87.27 906.80 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
78. Tcf4 ENSMUSG00000053477 87.27 906.80 transcription factor 4 [Source:MGI Symbol;Acc:MGI:98506]
79. Hspe1 ENSMUSG00000073676 86.11 894.75 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
80. Gm21897 ENSMUSG00000094472 84.94 882.59 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
81. Hmgn1 ENSMUSG00000040681 84.94 882.59 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
82. Tpm4 ENSMUSG00000031799 84.94 882.59 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
83. Cdk4 ENSMUSG00000006728 81.45 846.32 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
84. Cox8a ENSMUSG00000035885 81.45 846.32 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
85. Eef2 ENSMUSG00000034994 81.45 846.32 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
86. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 81.45 846.32 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
87. Ran ENSMUSG00000029430 81.45 846.32 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
88. Rps5 ENSMUSG00000012848 81.45 846.32 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
89. Sub1 ENSMUSG00000022205 80.29 834.27 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
90. Rpl37 ENSMUSG00000041841 79.13 822.22 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
91. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 77.96 810.06 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
92. Gm5805 ENSMUSG00000061848 76.80 798.01 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
93. Gpc3 ENSMUSG00000055653 74.47 773.80 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
94. Rps3a1 ENSMUSG00000028081 74.47 773.80 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
95. Ywhae ENSMUSG00000020849 74.47 773.80 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
96. H2afy ENSMUSG00000015937 73.31 761.74 H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]
97. Fscn1 ENSMUSG00000029581 72.14 749.59 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
98. Gm5963 ENSMUSG00000052192 72.14 749.59 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
99. Morf4l2 ENSMUSG00000031422 72.14 749.59 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
100. Srsf3 ENSMUSG00000071172 72.14 749.59 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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