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Experiment Mouse_E11_5_slice_1, section s23.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4255.44 44210.15 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3693.94 38376.68 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Rnr2 ENSMUSG00000064339 3210.43 33353.45 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 2811.83 29212.36 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2506.82 26043.58 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 2314.45 24045.03 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 2081.36 21623.44 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1221.78 12693.18 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1068.41 11099.81 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Gm10800 ENSMUSG00000075014 1046.75 10874.78 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
11. H19 ENSMUSG00000000031 999.95 10388.57 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. mt-Nd5 ENSMUSG00000064367 859.58 8930.26 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. mt-Nd3 ENSMUSG00000064360 768.60 7985.06 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Actb ENSMUSG00000029580 654.22 6796.75 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Co3 ENSMUSG00000064358 632.55 6571.62 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Hbb-y ENSMUSG00000052187 543.30 5644.39 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. Mdk ENSMUSG00000027239 529.44 5500.40 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Igf2 ENSMUSG00000048583 489.58 5086.29 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Gm13340 ENSMUSG00000083563 432.39 4492.14 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Eef1a1 ENSMUSG00000037742 408.13 4240.10 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. mt-Rnr1 ENSMUSG00000064337 331.87 3447.83 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
22. Hba-a1 ENSMUSG00000069919 293.75 3051.80 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. Hmga2 ENSMUSG00000056758 272.08 2826.66 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Nedd4 ENSMUSG00000032216 253.89 2637.69 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Npm1 ENSMUSG00000057113 253.02 2628.65 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Tuba1b ENSMUSG00000023004 247.82 2574.62 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Rpsa ENSMUSG00000032518 236.56 2457.64 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Gm17132 ENSMUSG00000061331 214.89 2232.51 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
29. Hbb-bh1 ENSMUSG00000052217 207.10 2151.58 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
30. Hba-x ENSMUSG00000055609 188.03 1953.46 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
31. Grb10 ENSMUSG00000020176 182.83 1899.44 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
32. Hnrnpc ENSMUSG00000060373 181.10 1881.46 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
33. Peg3 ENSMUSG00000002265 180.23 1872.43 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
34. Pkm ENSMUSG00000032294 178.50 1854.45 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Set ENSMUSG00000054766 177.63 1845.41 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
36. Cfl1 ENSMUSG00000056201 170.70 1773.42 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
37. Tubb5 ENSMUSG00000001525 169.84 1764.48 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
38. Hsp90ab1 ENSMUSG00000023944 168.97 1755.44 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
39. Ybx1 ENSMUSG00000028639 162.90 1692.38 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
40. Ubb ENSMUSG00000019505 162.04 1683.45 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
41. Rpl4 ENSMUSG00000032399 161.17 1674.41 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Eif4g2 ENSMUSG00000005610 159.44 1656.44 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
43. Myl6 ENSMUSG00000090841 157.71 1638.46 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
44. Tpt1 ENSMUSG00000060126 154.24 1602.41 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
45. Col3a1 ENSMUSG00000026043 141.24 1467.36 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
46. Banf1 ENSMUSG00000024844 136.91 1422.37 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
47. Rpl23 ENSMUSG00000071415 136.91 1422.37 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Rpl18a ENSMUSG00000045128 133.44 1386.32 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
49. Malat1 ENSMUSG00000092341 132.58 1377.39 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
50. Rps20 ENSMUSG00000028234 132.58 1377.39 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
51. Paics ENSMUSG00000029247 130.84 1359.31 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
52. Hba-a2 ENSMUSG00000069917 127.38 1323.36 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
53. Ndufa12 ENSMUSG00000020022 126.51 1314.32 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
54. Ywhab ENSMUSG00000018326 125.64 1305.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
55. Pabpc1 ENSMUSG00000022283 124.78 1296.35 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
56. Chchd2 ENSMUSG00000070493 120.45 1251.37 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
57. Atp5g3 ENSMUSG00000018770 116.11 1206.28 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
58. Fkbp1a ENSMUSG00000032966 116.11 1206.28 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
59. Hsp90aa1 ENSMUSG00000021270 116.11 1206.28 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
60. Ccnd2 ENSMUSG00000000184 112.65 1170.33 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
61. U2af2 ENSMUSG00000030435 110.91 1152.25 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
62. Eef1b2 ENSMUSG00000025967 110.05 1143.32 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
63. Ago2 ENSMUSG00000036698 107.45 1116.31 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
64. Eif5a ENSMUSG00000078812 105.71 1098.23 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
65. Rps26 ENSMUSG00000025362 104.85 1089.30 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
66. Gm21897 ENSMUSG00000094472 102.25 1062.28 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
67. Gm5805 ENSMUSG00000061848 100.52 1044.31 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
68. Rrm2 ENSMUSG00000020649 100.52 1044.31 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
69. Cdkn1c ENSMUSG00000037664 99.65 1035.27 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
70. Rps4x ENSMUSG00000031320 97.05 1008.26 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
71. Hspe1 ENSMUSG00000073676 94.45 981.25 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
72. 2810417H13Rik 93.58 972.21 RIKEN cDNA 2810417H13 gene
73. Tuba1a ENSMUSG00000072235 92.72 963.28 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
74. Lamp1 ENSMUSG00000031447 91.85 954.24 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
75. Marcks ENSMUSG00000069662 91.85 954.24 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
76. Tmsb4x ENSMUSG00000049775 91.85 954.24 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
77. Tpm4 ENSMUSG00000031799 91.85 954.24 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
78. Ran ENSMUSG00000029430 90.98 945.20 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
79. Rps5 ENSMUSG00000012848 90.12 936.26 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
80. Ngfrap1 87.52 909.25 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
81. Top2a ENSMUSG00000020914 86.65 900.21 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
82. Anp32b ENSMUSG00000028333 85.78 891.18 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
83. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 84.05 873.20 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
84. Sub1 ENSMUSG00000022205 84.05 873.20 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
85. Wbp5 84.05 873.20 WW domain binding protein 5
86. Eef2 ENSMUSG00000034994 82.32 855.23 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
87. Hoxc8 ENSMUSG00000001657 80.59 837.26 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
88. Caprin1 ENSMUSG00000027184 79.72 828.22 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
89. Trim28 ENSMUSG00000005566 79.72 828.22 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
90. Cdk4 ENSMUSG00000006728 78.85 819.18 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
91. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 78.85 819.18 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
92. Morf4l2 ENSMUSG00000031422 78.85 819.18 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
93. Pcbp1 ENSMUSG00000051695 77.99 810.25 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
94. Rps3a1 ENSMUSG00000028081 77.12 801.21 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
95. Adprh ENSMUSG00000002844 76.25 792.17 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
96. Son ENSMUSG00000022961 75.39 783.23 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
97. Ywhaz ENSMUSG00000022285 75.39 783.23 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
98. Morf4l1 ENSMUSG00000062270 74.52 774.20 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
99. Cox8a ENSMUSG00000035885 72.79 756.22 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
100. Hmgn1 ENSMUSG00000040681 72.79 756.22 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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