Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s22.

Sample reads: 96,265. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4099.65 42587.09 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3586.15 37252.86 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Rnr2 ENSMUSG00000064339 3316.91 34456.00 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 3160.55 32831.73 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2638.73 27411.08 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 2171.49 22557.40 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 2050.29 21298.37 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1304.56 13551.74 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1088.06 11302.75 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. H19 ENSMUSG00000000031 1057.53 10985.60 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Nd5 ENSMUSG00000064367 868.78 9024.87 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Nd3 ENSMUSG00000064360 793.84 8246.39 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 684.66 7112.23 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Hbb-y ENSMUSG00000052187 604.17 6276.11 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
15. Mdk ENSMUSG00000027239 582.89 6055.05 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Igf2 ENSMUSG00000048583 579.19 6016.61 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. mt-Co3 ENSMUSG00000064358 566.23 5881.99 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Gm13340 ENSMUSG00000083563 484.82 5036.30 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Eef1a1 ENSMUSG00000037742 453.36 4709.49 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
20. Hba-x ENSMUSG00000055609 427.45 4440.34 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
21. Hba-a1 ENSMUSG00000069919 349.73 3632.99 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
22. Npm1 ENSMUSG00000057113 297.00 3085.23 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. mt-Rnr1 ENSMUSG00000064337 276.64 2873.73 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
24. Gm10800 ENSMUSG00000075014 247.03 2566.14 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
25. Nedd4 ENSMUSG00000032216 235.93 2450.84 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Rpsa ENSMUSG00000032518 235.01 2441.28 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
27. Cfl1 ENSMUSG00000056201 215.58 2239.44 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Hbb-bh1 ENSMUSG00000052217 210.02 2181.68 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
29. Pkm ENSMUSG00000032294 200.77 2085.59 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Hmga2 ENSMUSG00000056758 199.85 2076.04 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
31. Tuba1b ENSMUSG00000023004 198.00 2056.82 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
32. Ubb ENSMUSG00000019505 187.82 1951.07 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Rpl4 ENSMUSG00000032399 185.04 1922.19 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Tubb5 ENSMUSG00000001525 181.34 1883.76 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
35. Tpt1 ENSMUSG00000060126 176.72 1835.76 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
36. Eif4g2 ENSMUSG00000005610 170.24 1768.45 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Hnrnpc ENSMUSG00000060373 167.46 1739.57 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
38. Grb10 ENSMUSG00000020176 166.54 1730.01 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
39. Hba-a2 ENSMUSG00000069917 165.61 1720.35 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
40. Myl6 ENSMUSG00000090841 163.76 1701.14 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
41. Rpl23 ENSMUSG00000071415 157.29 1633.93 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Hsp90ab1 ENSMUSG00000023944 155.44 1614.71 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
43. Chchd2 ENSMUSG00000070493 151.74 1576.27 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Ybx1 ENSMUSG00000028639 151.74 1576.27 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
45. Eef1b2 ENSMUSG00000025967 143.41 1489.74 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Eif5a ENSMUSG00000078812 143.41 1489.74 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Pabpc1 ENSMUSG00000022283 137.86 1432.09 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
48. Banf1 ENSMUSG00000024844 136.93 1422.43 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
49. U2af2 ENSMUSG00000030435 136.93 1422.43 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
50. Rpl18a ENSMUSG00000045128 134.16 1393.65 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
51. Hsp90aa1 ENSMUSG00000021270 130.46 1355.22 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Tmsb4x ENSMUSG00000049775 126.76 1316.78 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
53. Ywhab ENSMUSG00000018326 126.76 1316.78 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Peg3 ENSMUSG00000002265 125.83 1307.12 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
55. Rrm2 ENSMUSG00000020649 124.90 1297.46 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
56. Set ENSMUSG00000054766 124.90 1297.46 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
57. Rps4x ENSMUSG00000031320 122.13 1268.68 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
58. Col3a1 ENSMUSG00000026043 121.20 1259.02 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
59. Malat1 ENSMUSG00000092341 121.20 1259.02 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
60. Rps5 ENSMUSG00000012848 121.20 1259.02 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
61. Rps20 ENSMUSG00000028234 119.35 1239.81 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
62. Ndufa12 ENSMUSG00000020022 117.50 1220.59 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
63. Gm17132 ENSMUSG00000061331 115.65 1201.37 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
64. Ago2 ENSMUSG00000036698 113.80 1182.15 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
65. Sub1 ENSMUSG00000022205 111.95 1162.93 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
66. Atp5g3 ENSMUSG00000018770 107.33 1114.94 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
67. Paics ENSMUSG00000029247 106.40 1105.28 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
68. Gm14303 ENSMUSG00000081344 105.48 1095.72 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
69. Cox8a ENSMUSG00000035885 104.55 1086.06 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
70. Pcbp1 ENSMUSG00000051695 104.55 1086.06 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
71. Fkbp1a ENSMUSG00000032966 102.70 1066.85 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
72. Anp32b ENSMUSG00000028333 98.07 1018.75 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
73. Rps26 ENSMUSG00000025362 97.15 1009.19 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
74. Rpl37 ENSMUSG00000041841 96.22 999.53 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
75. Tecr ENSMUSG00000031708 95.30 989.97 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
76. Lamp1 ENSMUSG00000031447 93.45 970.76 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
77. Marcks ENSMUSG00000069662 93.45 970.76 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
78. Gm5805 ENSMUSG00000061848 92.52 961.10 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
79. Ran ENSMUSG00000029430 92.52 961.10 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
80. Top2a ENSMUSG00000020914 92.52 961.10 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
81. 2810417H13Rik 90.67 941.88 RIKEN cDNA 2810417H13 gene
82. Hmgn1 ENSMUSG00000040681 89.75 932.32 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
83. Rps3a1 ENSMUSG00000028081 89.75 932.32 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
84. Ccnd2 ENSMUSG00000000184 88.82 922.66 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
85. Rplp1 ENSMUSG00000007892 86.97 903.44 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
86. Cd24a ENSMUSG00000047139 82.34 855.35 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
87. Hoxc8 ENSMUSG00000001657 81.42 845.79 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
88. Tuba1a ENSMUSG00000072235 81.42 845.79 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
89. Cdkn1c ENSMUSG00000037664 80.49 836.13 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
90. Meg3 ENSMUSG00000021268 79.57 826.57 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
91. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 79.57 826.57 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
92. Tubb2b ENSMUSG00000045136 79.57 826.57 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
93. Cltc ENSMUSG00000047126 78.64 816.91 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
94. Trim28 ENSMUSG00000005566 78.64 816.91 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
95. Ywhae ENSMUSG00000020849 78.64 816.91 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
96. H3f3b ENSMUSG00000016559 77.72 807.35 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
97. Morf4l1 ENSMUSG00000062270 77.72 807.35 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
98. Fscn1 ENSMUSG00000029581 76.79 797.69 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
99. Tmpo ENSMUSG00000019961 76.79 797.69 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
100. Hspe1 ENSMUSG00000073676 75.87 788.14 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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