Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s21.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3889.14 40404.91 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3571.08 37100.53 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 3560.08 36986.25 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd1 ENSMUSG00000064341 2576.57 26768.40 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Atp6 ENSMUSG00000064357 2240.18 23273.59 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Nd4 ENSMUSG00000064363 2216.34 23025.92 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co2 ENSMUSG00000064354 2194.35 22797.46 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Co1 ENSMUSG00000064351 1161.34 12065.35 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1088.92 11312.97 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd5 ENSMUSG00000064367 940.43 9770.28 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. H19 ENSMUSG00000000031 804.78 8360.99 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. mt-Nd3 ENSMUSG00000064360 773.61 8037.16 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 650.79 6761.16 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Co3 ENSMUSG00000064358 592.13 6151.73 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Hbb-y ENSMUSG00000052187 531.63 5523.19 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. Eef1a1 ENSMUSG00000037742 431.72 4485.21 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Gm13340 ENSMUSG00000083563 431.72 4485.21 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Rnr1 ENSMUSG00000064337 408.80 4247.09 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
19. Gm10800 ENSMUSG00000075014 396.89 4123.35 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
20. Igf2 ENSMUSG00000048583 385.89 4009.07 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
21. Mdk ENSMUSG00000027239 374.89 3894.79 midkine [Source:MGI Symbol;Acc:MGI:96949]
22. Npm1 ENSMUSG00000057113 274.98 2856.81 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Tuba1b ENSMUSG00000023004 250.23 2599.68 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Hba-a1 ENSMUSG00000069919 247.48 2571.11 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
25. Nedd4 ENSMUSG00000032216 236.48 2456.83 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Rpsa ENSMUSG00000032518 236.48 2456.83 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
27. Pkm ENSMUSG00000032294 209.90 2180.69 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Hnrnpc ENSMUSG00000060373 201.65 2094.97 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
29. Hmga2 ENSMUSG00000056758 197.99 2056.95 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
30. Hsp90ab1 ENSMUSG00000023944 196.15 2037.83 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Cfl1 ENSMUSG00000056201 195.24 2028.38 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Hba-x ENSMUSG00000055609 195.24 2028.38 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
33. Ubb ENSMUSG00000019505 193.40 2009.26 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Eif4g2 ENSMUSG00000005610 192.49 1999.81 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Hbb-bh1 ENSMUSG00000052217 186.99 1942.67 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
36. Tubb5 ENSMUSG00000001525 185.15 1923.55 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
37. Tpt1 ENSMUSG00000060126 176.90 1837.84 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Grb10 ENSMUSG00000020176 173.24 1799.82 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
39. Rpl4 ENSMUSG00000032399 171.40 1780.70 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Ybx1 ENSMUSG00000028639 164.99 1714.11 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
41. Myl6 ENSMUSG00000090841 164.07 1704.55 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
42. Rpl23 ENSMUSG00000071415 153.99 1599.83 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
43. Rpl18a ENSMUSG00000045128 143.91 1495.10 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
44. Tuba1a ENSMUSG00000072235 143.91 1495.10 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
45. Atp5g3 ENSMUSG00000018770 142.07 1475.99 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
46. Hsp90aa1 ENSMUSG00000021270 136.57 1418.85 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
47. Malat1 ENSMUSG00000092341 133.82 1390.28 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
48. Tubb2b ENSMUSG00000045136 132.91 1380.82 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
49. Rps26 ENSMUSG00000025362 125.57 1304.57 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
50. Set ENSMUSG00000054766 123.74 1285.55 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
51. Rrm2 ENSMUSG00000020649 120.07 1247.43 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
52. Peg3 ENSMUSG00000002265 116.41 1209.40 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
53. Tmsb4x ENSMUSG00000049775 116.41 1209.40 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
54. Eif5a ENSMUSG00000078812 115.49 1199.84 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
55. Gm17132 ENSMUSG00000061331 114.58 1190.39 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
56. Chchd2 ENSMUSG00000070493 113.66 1180.83 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
57. Eef1b2 ENSMUSG00000025967 113.66 1180.83 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
58. Paics ENSMUSG00000029247 113.66 1180.83 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
59. Ywhab ENSMUSG00000018326 113.66 1180.83 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
60. Ndufa12 ENSMUSG00000020022 112.74 1171.27 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
61. Fkbp1a ENSMUSG00000032966 110.91 1152.26 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
62. Hba-a2 ENSMUSG00000069917 107.24 1114.13 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
63. Cox8a ENSMUSG00000035885 105.41 1095.12 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
64. Pcbp1 ENSMUSG00000051695 105.41 1095.12 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
65. Pabpc1 ENSMUSG00000022283 101.74 1056.99 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Banf1 ENSMUSG00000024844 99.91 1037.98 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
67. Lamp1 ENSMUSG00000031447 99.91 1037.98 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
68. U2af2 ENSMUSG00000030435 99.91 1037.98 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
69. Sub1 ENSMUSG00000022205 98.99 1028.42 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
70. Ago2 ENSMUSG00000036698 98.08 1018.97 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
71. Col3a1 ENSMUSG00000026043 98.08 1018.97 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
72. Map1b ENSMUSG00000052727 98.08 1018.97 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
73. Trim28 ENSMUSG00000005566 96.24 999.85 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
74. Cdkn1c ENSMUSG00000037664 95.33 990.40 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
75. Gm5805 ENSMUSG00000061848 94.41 980.84 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
76. Ran ENSMUSG00000029430 94.41 980.84 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
77. Anp32b ENSMUSG00000028333 92.58 961.83 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
78. Ddx5 ENSMUSG00000020719 90.74 942.71 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
79. Rps5 ENSMUSG00000012848 90.74 942.71 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
80. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 90.74 942.71 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
81. Ngfrap1 89.83 933.26 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
82. Hnrnpa2b1 ENSMUSG00000004980 88.91 923.70 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
83. Morf4l2 ENSMUSG00000031422 88.91 923.70 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
84. Rps4x ENSMUSG00000031320 88.91 923.70 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
85. Gm14303 ENSMUSG00000081344 87.99 914.14 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
86. Top2a ENSMUSG00000020914 87.99 914.14 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
87. Rplp1 ENSMUSG00000007892 86.16 895.13 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
88. Marcks ENSMUSG00000069662 82.49 857.00 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
89. Rps20 ENSMUSG00000028234 82.49 857.00 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
90. Arl6ip1 ENSMUSG00000030654 80.66 837.99 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
91. H3f3b ENSMUSG00000016559 79.74 828.43 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
92. Hspe1 ENSMUSG00000073676 79.74 828.43 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
93. Marcksl1 ENSMUSG00000047945 79.74 828.43 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
94. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 77.91 809.42 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
95. Hoxc8 ENSMUSG00000001657 77.91 809.42 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
96. Scd2 ENSMUSG00000025203 77.91 809.42 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
97. Caprin1 ENSMUSG00000027184 76.99 799.86 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
98. Rps3a1 ENSMUSG00000028081 76.99 799.86 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
99. Ywhae ENSMUSG00000020849 76.99 799.86 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
100. 2810417H13Rik 76.08 790.41 RIKEN cDNA 2810417H13 gene
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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