Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s20.

Sample reads: 96,258. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5943.95 61750.97 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 3720.11 38647.77 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. Ptma ENSMUSG00000026238 3482.72 36181.56 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2534.19 26327.39 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2307.08 23967.97 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 2153.96 22377.23 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1987.48 20647.69 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1323.62 13750.93 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 1258.88 13078.35 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Co1 ENSMUSG00000064351 1048.21 10889.73 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Co3 ENSMUSG00000064358 737.86 7665.54 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. mt-Nd3 ENSMUSG00000064360 723.47 7516.04 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. H19 ENSMUSG00000000031 655.64 6811.36 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Actb ENSMUSG00000029580 641.26 6661.97 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Hbb-y ENSMUSG00000052187 598.09 6213.48 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. mt-Rnr1 ENSMUSG00000064337 523.08 5434.21 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
17. Eef1a1 ENSMUSG00000037742 463.47 4814.93 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Gm13340 ENSMUSG00000083563 454.22 4718.84 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Igf2 ENSMUSG00000048583 415.17 4313.15 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
20. Gm10800 ENSMUSG00000075014 394.62 4099.66 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
21. Mdk ENSMUSG00000027239 391.54 4067.66 midkine [Source:MGI Symbol;Acc:MGI:96949]
22. Hba-a1 ENSMUSG00000069919 351.46 3651.28 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. Npm1 ENSMUSG00000057113 278.49 2893.20 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Rpsa ENSMUSG00000032518 250.75 2605.01 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Tubb5 ENSMUSG00000001525 245.61 2551.61 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Nedd4 ENSMUSG00000032216 234.30 2434.11 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Hba-x ENSMUSG00000055609 233.28 2423.52 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
28. Cfl1 ENSMUSG00000056201 228.14 2370.12 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
29. Tuba1b ENSMUSG00000023004 219.92 2284.72 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
30. Tpt1 ENSMUSG00000060126 215.81 2242.02 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Pkm ENSMUSG00000032294 214.78 2231.32 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Hbb-bh1 ENSMUSG00000052217 212.72 2209.92 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
33. Ubb ENSMUSG00000019505 210.67 2188.63 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Hmga2 ENSMUSG00000056758 197.31 2049.83 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
35. Set ENSMUSG00000054766 187.03 1943.03 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
36. Tuba1a ENSMUSG00000072235 184.98 1921.73 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
37. Eif4g2 ENSMUSG00000005610 173.67 1804.24 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Hsp90ab1 ENSMUSG00000023944 165.45 1718.84 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
39. Hba-a2 ENSMUSG00000069917 164.42 1708.14 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
40. Myl6 ENSMUSG00000090841 164.42 1708.14 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
41. Chchd2 ENSMUSG00000070493 161.34 1676.14 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
42. Rpl4 ENSMUSG00000032399 159.29 1654.84 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Rpl18a ENSMUSG00000045128 154.15 1601.45 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
44. Tubb2b ENSMUSG00000045136 153.12 1590.75 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
45. Ybx1 ENSMUSG00000028639 153.12 1590.75 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
46. Banf1 ENSMUSG00000024844 152.09 1580.04 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
47. Rpl23 ENSMUSG00000071415 151.07 1569.45 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Rps20 ENSMUSG00000028234 146.95 1526.65 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Grb10 ENSMUSG00000020176 144.90 1505.35 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
50. Hnrnpc ENSMUSG00000060373 139.76 1451.95 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
51. Tmsb4x ENSMUSG00000049775 136.68 1419.95 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
52. Ywhab ENSMUSG00000018326 136.68 1419.95 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Eef1b2 ENSMUSG00000025967 132.57 1377.25 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
54. Fkbp1a ENSMUSG00000032966 131.54 1366.55 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
55. Atp5g3 ENSMUSG00000018770 126.40 1313.15 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
56. Eif5a ENSMUSG00000078812 125.37 1302.45 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
57. Cd24a ENSMUSG00000047139 123.32 1281.16 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
58. Hsp90aa1 ENSMUSG00000021270 123.32 1281.16 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Gm17132 ENSMUSG00000061331 122.29 1270.46 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
60. Lamp1 ENSMUSG00000031447 120.24 1249.16 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
61. Pabpc1 ENSMUSG00000022283 119.21 1238.46 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Paics ENSMUSG00000029247 116.12 1206.36 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
63. Map1b ENSMUSG00000052727 115.10 1195.76 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
64. Rps5 ENSMUSG00000012848 113.04 1174.36 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
65. Rps26 ENSMUSG00000025362 105.85 1099.66 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
66. U2af2 ENSMUSG00000030435 100.71 1046.26 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
67. Cdk4 ENSMUSG00000006728 99.68 1035.56 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
68. Gm5805 ENSMUSG00000061848 99.68 1035.56 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
69. Marcks ENSMUSG00000069662 98.65 1024.86 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
70. Sub1 ENSMUSG00000022205 97.63 1014.27 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
71. Pcbp1 ENSMUSG00000051695 96.60 1003.57 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
72. Ndufa12 ENSMUSG00000020022 95.57 992.87 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
73. Rps4x ENSMUSG00000031320 95.57 992.87 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
74. Pbx1 ENSMUSG00000052534 92.49 960.87 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
75. Col3a1 ENSMUSG00000026043 91.46 950.17 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
76. Ywhag ENSMUSG00000051391 91.46 950.17 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
77. Malat1 ENSMUSG00000092341 90.43 939.47 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
78. Gm14303 ENSMUSG00000081344 88.38 918.17 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
79. Cox8a ENSMUSG00000035885 84.27 875.47 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
80. Ran ENSMUSG00000029430 84.27 875.47 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
81. Cdkn1c ENSMUSG00000037664 81.18 843.37 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
82. Ngfrap1 81.18 843.37 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
83. Rpl32 ENSMUSG00000057841 81.18 843.37 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
84. Tecr ENSMUSG00000031708 81.18 843.37 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
85. Rps3a1 ENSMUSG00000028081 79.13 822.07 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
86. Ago2 ENSMUSG00000036698 78.10 811.37 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
87. Peg3 ENSMUSG00000002265 78.10 811.37 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
88. Rpl41 ENSMUSG00000093674 77.07 800.67 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
89. Adprh ENSMUSG00000002844 76.05 790.07 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
90. Caprin1 ENSMUSG00000027184 76.05 790.07 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
91. Ccnd2 ENSMUSG00000000184 76.05 790.07 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
92. Hmgn1 ENSMUSG00000040681 76.05 790.07 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
93. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 76.05 790.07 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
94. Arpc2 ENSMUSG00000006304 75.02 779.37 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
95. Fkbp4 ENSMUSG00000030357 75.02 779.37 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
96. Wbp5 75.02 779.37 WW domain binding protein 5
97. Eef2 ENSMUSG00000034994 73.99 768.67 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
98. Rpl37 ENSMUSG00000041841 72.96 757.97 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
99. H3f3b ENSMUSG00000016559 71.94 747.38 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
100. Hnrnpa2b1 ENSMUSG00000004980 71.94 747.38 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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