Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s17.

Sample reads: 96,248. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5012.99 52083.99 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 3631.71 37732.76 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Cytb ENSMUSG00000064370 3213.18 33384.32 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd1 ENSMUSG00000064341 2615.47 27174.23 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2226.36 23131.45 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Atp6 ENSMUSG00000064357 2146.13 22297.87 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Nd4 ENSMUSG00000064363 1843.93 19158.07 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
8. mt-Nd2 ENSMUSG00000064345 1211.46 12586.83 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1159.31 12045.01 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd3 ENSMUSG00000064360 808.98 8405.15 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Nd5 ENSMUSG00000064367 800.95 8321.71 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Rnr1 ENSMUSG00000064337 632.47 6571.24 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
13. mt-Co3 ENSMUSG00000064358 564.28 5862.76 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Eef1a1 ENSMUSG00000037742 504.11 5237.60 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Gm13340 ENSMUSG00000083563 462.65 4806.84 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
16. Actb ENSMUSG00000029580 447.95 4654.11 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. H19 ENSMUSG00000000031 434.57 4515.10 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. Hbb-y ENSMUSG00000052187 375.74 3903.87 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
19. Rpsa ENSMUSG00000032518 302.20 3139.80 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Igf2 ENSMUSG00000048583 267.43 2778.55 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
21. Tuba1b ENSMUSG00000023004 264.76 2750.80 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Mdk ENSMUSG00000027239 258.07 2681.30 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. Npm1 ENSMUSG00000057113 244.70 2542.39 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Set ENSMUSG00000054766 239.35 2486.80 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
25. Hmga2 ENSMUSG00000056758 238.01 2472.88 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
26. Nedd4 ENSMUSG00000032216 228.65 2375.63 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Tubb2b ENSMUSG00000045136 228.65 2375.63 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
28. Ubb ENSMUSG00000019505 227.32 2361.81 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Pkm ENSMUSG00000032294 224.64 2333.97 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Tuba1a ENSMUSG00000072235 220.63 2292.30 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
31. Cfl1 ENSMUSG00000056201 213.94 2222.80 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Malat1 ENSMUSG00000092341 208.60 2167.31 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
33. Hba-a1 ENSMUSG00000069919 205.92 2139.47 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
34. Hnrnpc ENSMUSG00000060373 196.56 2042.22 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
35. Tpt1 ENSMUSG00000060126 196.56 2042.22 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
36. Tubb5 ENSMUSG00000001525 196.56 2042.22 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
37. Eif4g2 ENSMUSG00000005610 188.54 1958.89 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Gm10800 ENSMUSG00000075014 184.53 1917.23 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
39. Rpl23 ENSMUSG00000071415 183.19 1903.31 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Tmsb4x ENSMUSG00000049775 183.19 1903.31 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
41. Ybx1 ENSMUSG00000028639 172.49 1792.14 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
42. Hba-x ENSMUSG00000055609 171.16 1778.32 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
43. Hsp90aa1 ENSMUSG00000021270 169.82 1764.40 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
44. Rpl18a ENSMUSG00000045128 161.80 1681.07 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
45. Hbb-bh1 ENSMUSG00000052217 160.46 1667.15 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
46. Myl6 ENSMUSG00000090841 159.12 1653.23 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
47. Grb10 ENSMUSG00000020176 151.10 1569.90 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
48. Chchd2 ENSMUSG00000070493 148.42 1542.05 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
49. Rps26 ENSMUSG00000025362 141.74 1472.65 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
50. Rpl4 ENSMUSG00000032399 139.06 1444.81 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
51. Atp5g3 ENSMUSG00000018770 133.72 1389.32 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
52. Map1b ENSMUSG00000052727 131.04 1361.48 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
53. Ndufa12 ENSMUSG00000020022 129.70 1347.56 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
54. Hsp90ab1 ENSMUSG00000023944 123.02 1278.15 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
55. Eef1b2 ENSMUSG00000025967 121.68 1264.23 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
56. Ngfrap1 117.67 1222.57 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
57. Eif5a ENSMUSG00000078812 115.00 1194.83 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
58. Sub1 ENSMUSG00000022205 113.66 1180.91 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
59. Cox8a ENSMUSG00000035885 112.32 1166.98 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
60. Gm14303 ENSMUSG00000081344 112.32 1166.98 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
61. Ywhab ENSMUSG00000018326 112.32 1166.98 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
62. Paics ENSMUSG00000029247 109.65 1139.24 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
63. Pbx1 ENSMUSG00000052534 108.31 1125.32 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
64. Rps20 ENSMUSG00000028234 108.31 1125.32 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
65. Basp1 ENSMUSG00000045763 106.97 1111.40 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
66. Rps4x ENSMUSG00000031320 106.97 1111.40 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
67. Fkbp1a ENSMUSG00000032966 102.96 1069.73 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
68. Tecr ENSMUSG00000031708 102.96 1069.73 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
69. Rrm2 ENSMUSG00000020649 100.29 1041.99 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
70. Rps5 ENSMUSG00000012848 98.95 1028.07 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
71. Tubb3 ENSMUSG00000062380 98.95 1028.07 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
72. Cd24a ENSMUSG00000047139 97.61 1014.15 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
73. Gm5805 ENSMUSG00000061848 97.61 1014.15 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
74. U2af2 ENSMUSG00000030435 94.94 986.41 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
75. Gap43 ENSMUSG00000047261 93.60 972.49 growth associated protein 43 [Source:MGI Symbol;Acc:MGI:95639]
76. Hba-a2 ENSMUSG00000069917 92.26 958.56 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
77. Gm17132 ENSMUSG00000061331 90.93 944.75 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
78. Caprin1 ENSMUSG00000027184 89.59 930.82 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
79. Hspe1 ENSMUSG00000073676 89.59 930.82 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
80. Pabpc1 ENSMUSG00000022283 89.59 930.82 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
81. 2810417H13Rik 88.25 916.90 RIKEN cDNA 2810417H13 gene
82. Rps3a1 ENSMUSG00000028081 88.25 916.90 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
83. Stmn2 ENSMUSG00000027500 88.25 916.90 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
84. Banf1 ENSMUSG00000024844 86.91 902.98 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
85. Cadm1 ENSMUSG00000032076 86.91 902.98 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
86. Rplp1 ENSMUSG00000007892 86.91 902.98 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
87. Top2a ENSMUSG00000020914 86.91 902.98 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
88. Eef2 ENSMUSG00000034994 85.58 889.16 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
89. Morf4l2 ENSMUSG00000031422 85.58 889.16 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
90. Cdk4 ENSMUSG00000006728 84.24 875.24 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
91. Ywhag ENSMUSG00000051391 84.24 875.24 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
92. Ran ENSMUSG00000029430 82.90 861.31 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
93. Ywhaq ENSMUSG00000076432 82.90 861.31 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
94. Gm5963 ENSMUSG00000052192 81.57 847.50 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
95. Lamp1 ENSMUSG00000031447 81.57 847.50 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
96. Peg3 ENSMUSG00000002265 81.57 847.50 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
97. Cltc ENSMUSG00000047126 80.23 833.57 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
98. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 80.23 833.57 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
99. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 78.89 819.65 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
100. Hoxc8 ENSMUSG00000001657 77.55 805.73 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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