Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_1, section s16.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4952.57 51459.55 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3784.66 39324.41 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 2545.75 26451.55 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 2266.37 23548.66 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2131.26 22144.80 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2045.00 21248.52 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1062.57 11040.61 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 841.97 8748.47 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. Actb ENSMUSG00000029580 837.39 8700.88 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Nd2 ENSMUSG00000064345 712.96 7407.99 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Co3 ENSMUSG00000064358 693.88 7209.74 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. H19 ENSMUSG00000000031 682.43 7090.77 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Hbb-y ENSMUSG00000052187 608.38 6321.36 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
14. Eef1a1 ENSMUSG00000037742 580.14 6027.93 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Rnr2 ENSMUSG00000064339 480.14 4988.88 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. Hba-a1 ENSMUSG00000069919 460.30 4782.74 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
17. Gm13340 ENSMUSG00000083563 442.74 4600.28 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Nd5 ENSMUSG00000064367 409.15 4251.26 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Mdk ENSMUSG00000027239 403.05 4187.88 midkine [Source:MGI Symbol;Acc:MGI:96949]
20. Hba-x ENSMUSG00000055609 364.88 3791.28 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
21. Tubb5 ENSMUSG00000001525 330.53 3434.36 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. Cfl1 ENSMUSG00000056201 311.44 3236.01 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Pkm ENSMUSG00000032294 311.44 3236.01 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Rpsa ENSMUSG00000032518 296.18 3077.45 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Tuba1b ENSMUSG00000023004 293.12 3045.66 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Tuba1a ENSMUSG00000072235 267.93 2783.92 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
27. Ubb ENSMUSG00000019505 260.30 2704.64 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Eif4g2 ENSMUSG00000005610 235.11 2442.90 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
29. Tubb2b ENSMUSG00000045136 227.48 2363.63 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
30. Npm1 ENSMUSG00000057113 223.66 2323.93 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
31. Nedd4 ENSMUSG00000032216 217.55 2260.45 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Rpl18a ENSMUSG00000045128 203.81 2117.68 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
33. Hnrnpc ENSMUSG00000060373 200.76 2085.99 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
34. Tpt1 ENSMUSG00000060126 195.42 2030.51 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Hba-a2 ENSMUSG00000069917 191.60 1990.81 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
36. Rpl4 ENSMUSG00000032399 190.84 1982.92 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Igf2 ENSMUSG00000048583 177.86 1848.05 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
38. Ndufa12 ENSMUSG00000020022 177.86 1848.05 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
39. Tmsb4x ENSMUSG00000049775 173.28 1800.46 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
40. Hbb-bh1 ENSMUSG00000052217 167.94 1744.98 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
41. Rpl23 ENSMUSG00000071415 163.36 1697.39 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Cd24a ENSMUSG00000047139 161.07 1673.59 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
43. Hsp90ab1 ENSMUSG00000023944 159.54 1657.70 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
44. Fkbp1a ENSMUSG00000032966 156.49 1626.01 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
45. Rps26 ENSMUSG00000025362 151.14 1570.42 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Paics ENSMUSG00000029247 150.38 1562.52 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
47. Rps20 ENSMUSG00000028234 149.62 1554.62 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
48. Eif5a ENSMUSG00000078812 148.09 1538.73 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
49. Map1b ENSMUSG00000052727 147.33 1530.83 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
50. Myl6 ENSMUSG00000090841 142.75 1483.24 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
51. Tecr ENSMUSG00000031708 141.98 1475.24 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
52. Chchd2 ENSMUSG00000070493 135.88 1411.86 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
53. Eef1b2 ENSMUSG00000025967 135.88 1411.86 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
54. Banf1 ENSMUSG00000024844 132.06 1372.17 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
55. Hsp90aa1 ENSMUSG00000021270 129.77 1348.37 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
56. U2af2 ENSMUSG00000030435 129.77 1348.37 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
57. Ywhaz ENSMUSG00000022285 127.48 1324.58 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
58. Hnrnpa2b1 ENSMUSG00000004980 124.42 1292.78 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
59. Ywhab ENSMUSG00000018326 123.66 1284.89 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
60. Rps4x ENSMUSG00000031320 119.84 1245.19 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
61. Cdkn1c ENSMUSG00000037664 117.55 1221.40 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
62. Grb10 ENSMUSG00000020176 114.50 1189.71 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
63. Set ENSMUSG00000054766 114.50 1189.71 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
64. Tubb3 ENSMUSG00000062380 113.74 1181.81 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
65. Rplp1 ENSMUSG00000007892 112.97 1173.81 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
66. Ybx1 ENSMUSG00000028639 112.97 1173.81 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
67. Gm5805 ENSMUSG00000061848 111.45 1158.02 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
68. Nnat ENSMUSG00000067786 109.92 1142.12 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
69. Cox8a ENSMUSG00000035885 108.39 1126.22 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
70. Ywhae ENSMUSG00000020849 107.63 1118.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
71. Hdac2 ENSMUSG00000019777 106.87 1110.43 histone deacetylase 2 [Source:MGI Symbol;Acc:MGI:1097691]
72. Cdk4 ENSMUSG00000006728 104.58 1086.64 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
73. Tmsb10 ENSMUSG00000079523 104.58 1086.64 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
74. Atp5g3 ENSMUSG00000018770 103.81 1078.64 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
75. Stmn2 ENSMUSG00000027500 103.81 1078.64 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
76. Gm14303 ENSMUSG00000081344 102.29 1062.84 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
77. Ran ENSMUSG00000029430 101.52 1054.84 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
78. Hmgn1 ENSMUSG00000040681 100.76 1046.94 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
79. Ngfrap1 100.76 1046.94 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
80. Rps5 ENSMUSG00000012848 98.47 1023.15 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
81. Ndufc2 ENSMUSG00000030647 96.94 1007.25 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
82. Lamp1 ENSMUSG00000031447 96.18 999.36 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
83. Ldha ENSMUSG00000063229 96.18 999.36 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
84. Stmn1 ENSMUSG00000028832 96.18 999.36 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
85. Sub1 ENSMUSG00000022205 95.42 991.46 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
86. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 93.89 975.56 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
87. Ddx39b ENSMUSG00000019432 92.36 959.66 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
88. Morf4l2 ENSMUSG00000031422 92.36 959.66 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
89. Gm9844 ENSMUSG00000091955 90.84 943.87 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
90. Rpl41 ENSMUSG00000093674 90.07 935.87 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
91. Scd2 ENSMUSG00000025203 90.07 935.87 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
92. Ywhag ENSMUSG00000051391 90.07 935.87 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
93. Hspe1 ENSMUSG00000073676 89.31 927.97 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
94. Rpl37 ENSMUSG00000041841 89.31 927.97 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
95. Eef2 ENSMUSG00000034994 88.55 920.08 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
96. Hmga2 ENSMUSG00000056758 88.55 920.08 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
97. Ddx5 ENSMUSG00000020719 87.02 904.18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
98. Crabp1 ENSMUSG00000032291 83.97 872.49 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
99. Pbx1 ENSMUSG00000052534 83.97 872.49 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
100. Rps3a1 ENSMUSG00000028081 83.97 872.49 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA