Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s15.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4334.61 45038.10 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 2842.00 29529.37 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Cytb ENSMUSG00000064370 2237.98 23253.39 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd4 ENSMUSG00000064363 2043.40 21231.63 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1825.37 18966.23 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 1765.16 18340.62 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1665.01 17300.03 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1005.85 10451.13 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 829.65 8620.35 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Co1 ENSMUSG00000064351 816.34 8482.06 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Actb ENSMUSG00000029580 704.79 7323.01 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Hbb-y ENSMUSG00000052187 555.22 5768.93 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
13. mt-Nd3 ENSMUSG00000064360 554.58 5762.28 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. H19 ENSMUSG00000000031 437.96 4550.56 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Eef1a1 ENSMUSG00000037742 425.92 4425.46 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. mt-Co3 ENSMUSG00000064358 402.47 4181.80 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Gm13340 ENSMUSG00000083563 362.54 3766.92 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Mdk ENSMUSG00000027239 318.81 3312.55 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Tuba1a ENSMUSG00000072235 303.59 3154.41 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
20. Cfl1 ENSMUSG00000056201 296.62 3081.98 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Nedd4 ENSMUSG00000032216 289.02 3003.02 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
22. Pkm ENSMUSG00000032294 283.31 2943.69 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. Hba-a1 ENSMUSG00000069919 282.68 2937.14 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
24. Hba-x ENSMUSG00000055609 273.81 2844.98 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
25. Tubb5 ENSMUSG00000001525 266.20 2765.91 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Igf2 ENSMUSG00000048583 255.42 2653.90 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
27. Tuba1b ENSMUSG00000023004 254.16 2640.81 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Rpsa ENSMUSG00000032518 249.72 2594.68 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Npm1 ENSMUSG00000057113 244.02 2535.45 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
30. Ubb ENSMUSG00000019505 227.54 2364.22 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Hnrnpc ENSMUSG00000060373 218.03 2265.41 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
32. Hbb-bh1 ENSMUSG00000052217 215.49 2239.02 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
33. Map1b ENSMUSG00000052727 212.33 2206.18 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
34. Tubb2b ENSMUSG00000045136 208.52 2166.60 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
35. Tpt1 ENSMUSG00000060126 201.55 2094.17 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
36. Hsp90ab1 ENSMUSG00000023944 199.65 2074.43 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Rpl4 ENSMUSG00000032399 189.51 1969.07 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Eif4g2 ENSMUSG00000005610 187.61 1949.33 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. mt-Rnr1 ENSMUSG00000064337 186.34 1936.14 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
40. Ybx1 ENSMUSG00000028639 167.33 1738.62 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
41. Tmsb4x ENSMUSG00000049775 164.16 1705.68 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
42. Myl6 ENSMUSG00000090841 155.28 1613.41 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
43. Tubb3 ENSMUSG00000062380 155.28 1613.41 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
44. Basp1 ENSMUSG00000045763 151.48 1573.93 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
45. Fkbp1a ENSMUSG00000032966 150.85 1567.38 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
46. Hmga2 ENSMUSG00000056758 150.21 1560.73 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
47. Atp5g3 ENSMUSG00000018770 148.31 1540.99 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Hsp90aa1 ENSMUSG00000021270 147.68 1534.45 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Rpl18a ENSMUSG00000045128 146.41 1521.25 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
50. Chchd2 ENSMUSG00000070493 145.14 1508.05 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
51. Malat1 ENSMUSG00000092341 145.14 1508.05 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
52. Rpl23 ENSMUSG00000071415 143.87 1494.86 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
53. Hba-a2 ENSMUSG00000069917 142.61 1481.77 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
54. U2af2 ENSMUSG00000030435 141.34 1468.57 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
55. Cd24a ENSMUSG00000047139 139.44 1448.83 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
56. Banf1 ENSMUSG00000024844 138.17 1435.63 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
57. Set ENSMUSG00000054766 138.17 1435.63 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
58. Eef1b2 ENSMUSG00000025967 131.20 1363.21 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
59. Grb10 ENSMUSG00000020176 130.56 1356.56 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
60. Ndufa12 ENSMUSG00000020022 129.93 1350.02 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
61. Paics ENSMUSG00000029247 129.93 1350.02 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
62. Eif5a ENSMUSG00000078812 121.69 1264.40 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
63. Rps26 ENSMUSG00000025362 120.42 1251.21 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
64. Stmn1 ENSMUSG00000028832 119.79 1244.66 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
65. Ngfrap1 118.52 1231.46 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
66. Pbx1 ENSMUSG00000052534 117.89 1224.92 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
67. Lamp1 ENSMUSG00000031447 116.62 1211.72 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
68. Rps4x ENSMUSG00000031320 116.62 1211.72 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Cdkn1c ENSMUSG00000037664 115.99 1205.18 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
70. Pcbp1 ENSMUSG00000051695 114.72 1191.98 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
71. Rrm2 ENSMUSG00000020649 114.72 1191.98 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
72. Rps20 ENSMUSG00000028234 112.82 1172.24 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
73. Tecr ENSMUSG00000031708 112.82 1172.24 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
74. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 107.75 1119.56 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
75. Cox8a ENSMUSG00000035885 105.85 1099.82 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
76. Fscn1 ENSMUSG00000029581 104.58 1086.62 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
77. Ywhab ENSMUSG00000018326 104.58 1086.62 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
78. Trp53i11 ENSMUSG00000068735 102.04 1060.23 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
79. Eef2 ENSMUSG00000034994 98.87 1027.29 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
80. Rps5 ENSMUSG00000012848 96.34 1001.01 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
81. Stmn2 ENSMUSG00000027500 96.34 1001.01 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
82. Sub1 ENSMUSG00000022205 96.34 1001.01 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
83. Cadm1 ENSMUSG00000032076 95.07 987.81 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
84. Marcks ENSMUSG00000069662 95.07 987.81 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
85. Ywhae ENSMUSG00000020849 93.80 974.61 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
86. Ran ENSMUSG00000029430 91.27 948.33 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
87. Ywhag ENSMUSG00000051391 91.27 948.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
88. Crabp1 ENSMUSG00000032291 90.63 941.68 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
89. Hnrnpa0 ENSMUSG00000007836 89.37 928.59 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
90. Jund ENSMUSG00000071076, ENSMUSG00000110974 89.37 928.59 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
91. Pabpc1 ENSMUSG00000022283 89.37 928.59 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
92. Adprh ENSMUSG00000002844 86.20 895.65 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
93. Anp32b ENSMUSG00000028333 86.20 895.65 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
94. Trim28 ENSMUSG00000005566 85.56 889.00 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
95. Hmgn1 ENSMUSG00000040681 84.93 882.45 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
96. Hnrnpk ENSMUSG00000021546 84.93 882.45 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
97. Morf4l1 ENSMUSG00000062270 84.30 875.91 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
98. Rplp1 ENSMUSG00000007892 83.66 869.26 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
99. Ina ENSMUSG00000034336 82.40 856.16 internexin neuronal intermediate filament protein, alpha [Source:MGI Symbol;Acc:MGI:96568]
100. Ywhaq ENSMUSG00000076432 82.40 856.16 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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