Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_1, section s1.

Sample reads: 96,263. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4741.16 49252.30 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 3732.57 38774.82 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Cytb ENSMUSG00000064370 2574.12 26740.57 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd1 ENSMUSG00000064341 1739.71 18072.52 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Atp6 ENSMUSG00000064357 1634.39 16978.43 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Nd4 ENSMUSG00000064363 1395.41 14495.85 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co2 ENSMUSG00000064354 1215.16 12623.37 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 925.55 9614.83 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 903.27 9383.38 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Co1 ENSMUSG00000064351 830.36 8625.98 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Hbb-y ENSMUSG00000052187 577.20 5996.09 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
12. Eef1a1 ENSMUSG00000037742 542.77 5638.42 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Actb ENSMUSG00000029580 508.34 5280.76 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Rnr1 ENSMUSG00000064337 500.24 5196.61 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
15. mt-Co3 ENSMUSG00000064358 437.46 4544.44 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. mt-Nd3 ENSMUSG00000064360 376.70 3913.25 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
17. Hba-x ENSMUSG00000055609 372.65 3871.18 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
18. Hba-a1 ENSMUSG00000069919 342.27 3555.58 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
19. Gm13340 ENSMUSG00000083563 332.14 3450.35 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Mdk ENSMUSG00000027239 322.02 3345.22 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. H19 ENSMUSG00000000031 315.94 3282.06 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
22. Nedd4 ENSMUSG00000032216 305.82 3176.93 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. Rpsa ENSMUSG00000032518 297.71 3092.68 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
24. Eif4g2 ENSMUSG00000005610 245.06 2545.74 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
25. Npm1 ENSMUSG00000057113 243.03 2524.65 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Set ENSMUSG00000054766 236.96 2461.60 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
27. Hbb-bh1 ENSMUSG00000052217 230.88 2398.44 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
28. Tuba1a ENSMUSG00000072235 228.86 2377.45 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
29. Gm10800 ENSMUSG00000075014 226.83 2356.36 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
30. Tuba1b ENSMUSG00000023004 226.83 2356.36 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
31. Tubb2b ENSMUSG00000045136 226.83 2356.36 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
32. Ubb ENSMUSG00000019505 212.65 2209.06 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Rpl18a ENSMUSG00000045128 210.63 2188.07 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
34. Ybx1 ENSMUSG00000028639 210.63 2188.07 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
35. Cfl1 ENSMUSG00000056201 204.55 2124.91 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
36. Tmsb4x ENSMUSG00000049775 196.45 2040.77 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
37. Pkm ENSMUSG00000032294 186.32 1935.54 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
38. Tpt1 ENSMUSG00000060126 184.30 1914.55 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Rrm2 ENSMUSG00000020649 178.22 1851.39 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
40. Tubb5 ENSMUSG00000001525 174.17 1809.32 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
41. Hsp90ab1 ENSMUSG00000023944 172.15 1788.34 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
42. Igf2 ENSMUSG00000048583 170.12 1767.25 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
43. U2af2 ENSMUSG00000030435 168.10 1746.26 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
44. Rpl4 ENSMUSG00000032399 166.07 1725.17 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Hba-a2 ENSMUSG00000069917 155.95 1620.05 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
46. Myl6 ENSMUSG00000090841 155.95 1620.05 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
47. Rpl23 ENSMUSG00000071415 153.92 1598.96 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Chchd2 ENSMUSG00000070493 149.87 1556.89 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
49. Crabp1 ENSMUSG00000032291 147.84 1535.80 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
50. Hnrnpc ENSMUSG00000060373 147.84 1535.80 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
51. Eif5a ENSMUSG00000078812 145.82 1514.81 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
52. Atp5g3 ENSMUSG00000018770 143.79 1493.72 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
53. Eef1b2 ENSMUSG00000025967 141.77 1472.74 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
54. Rps26 ENSMUSG00000025362 139.74 1451.65 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Sox2 ENSMUSG00000074637 137.72 1430.67 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
56. Grb10 ENSMUSG00000020176 129.62 1346.52 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
57. Hsp90aa1 ENSMUSG00000021270 129.62 1346.52 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
58. Pabpc1 ENSMUSG00000022283 129.62 1346.52 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
59. Banf1 ENSMUSG00000024844 127.59 1325.44 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
60. Stmn1 ENSMUSG00000028832 127.59 1325.44 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
61. Lamp1 ENSMUSG00000031447 121.52 1262.38 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
62. Map1b ENSMUSG00000052727 119.49 1241.29 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
63. Pbx1 ENSMUSG00000052534 117.47 1220.31 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
64. Gm17132 ENSMUSG00000061331 115.44 1199.22 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
65. Gm26924 Gm26924 115.44 1199.22
66. Rnd2 ENSMUSG00000001313 115.44 1199.22 Rho family GTPase 2 [Source:MGI Symbol;Acc:MGI:1338755]
67. Rps20 ENSMUSG00000028234 115.44 1199.22 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
68. Malat1 ENSMUSG00000092341 113.42 1178.23 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
69. Hmga2 ENSMUSG00000056758 111.39 1157.15 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
70. Trim28 ENSMUSG00000005566 111.39 1157.15 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
71. Ywhab ENSMUSG00000018326 111.39 1157.15 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
72. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 109.36 1136.06 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
73. Cd24a ENSMUSG00000047139 107.34 1115.07 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
74. Rps4x ENSMUSG00000031320 107.34 1115.07 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
75. Paics ENSMUSG00000029247 105.31 1093.99 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
76. Marcksl1 ENSMUSG00000047945 103.29 1073.00 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
77. Ran ENSMUSG00000029430 103.29 1073.00 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
78. Ywhaz ENSMUSG00000022285 103.29 1073.00 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
79. Arl6ip1 ENSMUSG00000030654 101.26 1051.91 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
80. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 101.26 1051.91 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
81. Gm5805 ENSMUSG00000061848 99.24 1030.93 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
82. Msi1 ENSMUSG00000054256 99.24 1030.93 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
83. Eef2 ENSMUSG00000034994 97.21 1009.84 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
84. Fkbp1a ENSMUSG00000032966 97.21 1009.84 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
85. Ldha ENSMUSG00000063229 97.21 1009.84 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
86. Trp53i11 ENSMUSG00000068735 97.21 1009.84 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
87. Adprh ENSMUSG00000002844 95.19 988.86 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
88. Basp1 ENSMUSG00000045763 95.19 988.86 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
89. Cdk4 ENSMUSG00000006728 95.19 988.86 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
90. Hoxc6 ENSMUSG00000001661 95.19 988.86 homeobox C6 [Source:MGI Symbol;Acc:MGI:96197]
91. Son ENSMUSG00000022961 95.19 988.86 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
92. Cltc ENSMUSG00000047126 93.16 967.77 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
93. Hnrnpa1 ENSMUSG00000046434 93.16 967.77 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
94. Rplp1 ENSMUSG00000007892 93.16 967.77 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
95. Top1 ENSMUSG00000070544 93.16 967.77 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
96. Cox8a ENSMUSG00000035885 91.14 946.78 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
97. Gm14303 ENSMUSG00000081344 91.14 946.78 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
98. H3f3b ENSMUSG00000016559 91.14 946.78 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
99. Hnrnpa2b1 ENSMUSG00000004980 91.14 946.78 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
100. Tmpo ENSMUSG00000019961 91.14 946.78 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA