Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s7.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2491.40 25882.85 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 1346.73 13991.01 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 1162.25 12074.47 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1145.56 11901.08 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. Hbb-y ENSMUSG00000052187 1141.83 11862.33 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
6. Eef1a1 ENSMUSG00000037742 884.92 9193.33 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
7. mt-Nd4 ENSMUSG00000064363 877.81 9119.46 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
8. mt-Rnr2 ENSMUSG00000064339 770.04 7999.85 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Co1 ENSMUSG00000064351 757.61 7870.72 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Co2 ENSMUSG00000064354 658.01 6835.99 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
11. Tubb5 ENSMUSG00000001525 628.53 6529.72 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
12. Rpsa ENSMUSG00000032518 601.54 6249.33 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
13. Actb ENSMUSG00000029580 568.87 5909.92 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Tuba1b ENSMUSG00000023004 456.31 4740.55 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
15. mt-Co3 ENSMUSG00000064358 431.98 4487.79 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Tuba1a ENSMUSG00000072235 390.26 4054.36 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
17. Hba-x ENSMUSG00000055609 389.90 4050.62 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
18. Tmsb4x ENSMUSG00000049775 358.48 3724.20 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
19. Set ENSMUSG00000054766 350.31 3639.33 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
20. Npm1 ENSMUSG00000057113 344.27 3576.58 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Mdk ENSMUSG00000027239 328.83 3416.17 midkine [Source:MGI Symbol;Acc:MGI:96949]
22. Rpl23 ENSMUSG00000071415 308.58 3205.80 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
23. mt-Nd2 ENSMUSG00000064345 278.40 2892.26 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
24. Hba-a1 ENSMUSG00000069919 278.05 2888.63 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
25. Rpl4 ENSMUSG00000032399 268.64 2790.87 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
26. Rpl18a ENSMUSG00000045128 257.98 2680.12 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
27. H19 ENSMUSG00000000031 252.30 2621.11 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
28. Hmgn1 ENSMUSG00000040681 251.77 2615.61 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
29. Hbb-bh1 ENSMUSG00000052217 249.46 2591.61 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
30. Chchd2 ENSMUSG00000070493 247.86 2574.99 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Ubb ENSMUSG00000019505 243.96 2534.47 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Hsp90ab1 ENSMUSG00000023944 242.71 2521.48 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. mt-Nd3 ENSMUSG00000064360 239.69 2490.11 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
34. Eif4g2 ENSMUSG00000005610 232.59 2416.35 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Tpt1 ENSMUSG00000060126 232.06 2410.84 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
36. Tubb2b ENSMUSG00000045136 228.15 2370.22 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
37. Rps4x ENSMUSG00000031320 216.26 2246.70 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
38. mt-Nd5 ENSMUSG00000064367 210.75 2189.46 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
39. Rplp1 ENSMUSG00000007892 210.22 2183.95 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
40. Hsp90aa1 ENSMUSG00000021270 198.15 2058.56 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Pkm ENSMUSG00000032294 195.66 2032.69 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
42. Eef1b2 ENSMUSG00000025967 191.93 1993.94 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
43. Gm13340 ENSMUSG00000083563 191.76 1992.17 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
44. Rps9 ENSMUSG00000006333 182.70 1898.05 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
45. Crabp1 ENSMUSG00000032291 179.50 1864.80 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
46. Eif5a ENSMUSG00000078812 176.31 1831.66 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 174.36 1811.40 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
48. Ybx1 ENSMUSG00000028639 170.80 1774.42 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
49. Ncl ENSMUSG00000026234 167.08 1735.77 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
50. Rps20 ENSMUSG00000028234 166.90 1733.90 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
51. Rps3a1 ENSMUSG00000028081 165.30 1717.28 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
52. Atp5g3 ENSMUSG00000018770 163.70 1700.66 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
53. Stmn1 ENSMUSG00000028832 163.70 1700.66 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
54. Serbp1 ENSMUSG00000036371 160.15 1663.78 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
55. Fkbp1a ENSMUSG00000032966 158.38 1645.39 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
56. Ran ENSMUSG00000029430 153.23 1591.89 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
57. Eef2 ENSMUSG00000034994 150.92 1567.89 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
58. Ccnd2 ENSMUSG00000000184 148.97 1547.63 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
59. Ldha ENSMUSG00000063229 145.41 1510.65 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
60. Igf2 ENSMUSG00000048583 142.57 1481.14 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
61. Rpl8 ENSMUSG00000003970 139.73 1451.64 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
62. Rps26 ENSMUSG00000025362 137.96 1433.25 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
63. Rps5 ENSMUSG00000012848 136.18 1414.76 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
64. Hnrnpc ENSMUSG00000060373 133.87 1390.76 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
65. Hmga2 ENSMUSG00000056758 131.39 1364.99 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
66. Pcbp1 ENSMUSG00000051695 131.21 1363.12 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
67. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 128.72 1337.26 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
68. Pabpc1 ENSMUSG00000022283 125.53 1304.12 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
69. Hba-a2 ENSMUSG00000069917 122.51 1272.74 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
70. Trim28 ENSMUSG00000005566 122.33 1270.87 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
71. Eef1g ENSMUSG00000071644 119.67 1243.24 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
72. Rrm2 ENSMUSG00000020649 119.67 1243.24 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
73. Gm8292 ENSMUSG00000100215 119.49 1241.37 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
74. Ddx5 ENSMUSG00000020719 117.72 1222.98 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
75. Cdkn1c ENSMUSG00000037664 116.47 1209.99 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
76. Ywhab ENSMUSG00000018326 115.59 1200.85 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
77. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 114.52 1189.73 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
78. Son ENSMUSG00000022961 114.52 1189.73 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
79. Mrfap1 ENSMUSG00000055302 110.97 1152.85 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
80. Btf3 ENSMUSG00000021660 110.61 1149.11 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
81. Gm5805 ENSMUSG00000061848 109.90 1141.74 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
82. mt-Rnr1 ENSMUSG00000064337 109.55 1138.10 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
83. Cfl1 ENSMUSG00000056201 108.31 1125.22 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
84. Map1b ENSMUSG00000052727 108.31 1125.22 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
85. Prdx1 ENSMUSG00000028691 108.13 1123.35 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
86. Grb10 ENSMUSG00000020176 106.89 1110.47 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
87. Hnrnpk ENSMUSG00000021546 104.05 1080.96 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
88. Banf1 ENSMUSG00000024844 103.33 1073.48 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
89. Cox8a ENSMUSG00000035885 101.20 1051.35 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
90. Myl6 ENSMUSG00000090841 100.85 1047.72 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
91. Hnrnpa0 ENSMUSG00000007836 99.61 1034.84 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
92. Srsf3 ENSMUSG00000071172 99.61 1034.84 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
93. Nedd4 ENSMUSG00000032216 98.72 1025.59 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
94. Sfpq ENSMUSG00000028820 97.65 1014.47 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
95. Cd24a ENSMUSG00000047139 96.41 1001.59 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
96. Paics ENSMUSG00000029247 96.23 999.72 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
97. Gm5963 ENSMUSG00000052192 95.70 994.22 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
98. Cadm1 ENSMUSG00000032076 95.35 990.58 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
99. Gm14586 ENSMUSG00000083621 92.50 960.97 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
100. Hnrnpa2b1 ENSMUSG00000004980 92.50 960.97 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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