Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s6.

Sample reads: 96,233. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2723.17 28297.63 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 1969.63 20467.27 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. Hbb-y ENSMUSG00000052187 896.23 9313.11 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
4. Eef1a1 ENSMUSG00000037742 816.92 8488.97 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
5. Actb ENSMUSG00000029580 806.01 8375.60 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
6. Rpsa ENSMUSG00000032518 777.71 8081.52 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
7. mt-Nd1 ENSMUSG00000064341 728.77 7572.96 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Cytb ENSMUSG00000064370 641.80 6669.22 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
9. mt-Co2 ENSMUSG00000064354 609.96 6338.36 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
10. mt-Atp6 ENSMUSG00000064357 590.80 6139.26 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
11. Tubb5 ENSMUSG00000001525 553.36 5750.20 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
12. mt-Nd4 ENSMUSG00000064363 448.11 4656.50 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
13. mt-Co1 ENSMUSG00000064351 431.01 4478.81 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
14. Tuba1b ENSMUSG00000023004 429.24 4460.42 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
15. Pkm ENSMUSG00000032294 378.54 3933.57 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
16. Hba-a1 ENSMUSG00000069919 359.96 3740.50 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
17. mt-Co3 ENSMUSG00000064358 352.59 3663.91 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Mdk ENSMUSG00000027239 347.88 3614.97 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Set ENSMUSG00000054766 334.32 3474.06 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
20. Hba-x ENSMUSG00000055609 325.18 3379.09 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
21. Npm1 ENSMUSG00000057113 319.87 3323.91 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tuba1a ENSMUSG00000072235 316.63 3290.24 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
23. Tmsb4x ENSMUSG00000049775 311.03 3232.05 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
24. mt-Rnr1 ENSMUSG00000064337 300.41 3121.69 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
25. Hsp90ab1 ENSMUSG00000023944 300.12 3118.68 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
26. Rpl23 ENSMUSG00000071415 295.99 3075.76 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
27. mt-Nd5 ENSMUSG00000064367 282.43 2934.85 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
28. Rplp1 ENSMUSG00000007892 275.94 2867.41 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
29. Rpl4 ENSMUSG00000032399 254.72 2646.91 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Tubb2b ENSMUSG00000045136 249.12 2588.71 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
31. Tpt1 ENSMUSG00000060126 247.64 2573.33 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Hbb-bh1 ENSMUSG00000052217 242.04 2515.14 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
33. Hmgn1 ENSMUSG00000040681 240.86 2502.88 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
34. Chchd2 ENSMUSG00000070493 239.09 2484.49 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Hsp90aa1 ENSMUSG00000021270 238.21 2475.34 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
36. Rps4x ENSMUSG00000031320 232.02 2411.02 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
37. Eef2 ENSMUSG00000034994 224.94 2337.45 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
38. Ubb ENSMUSG00000019505 220.52 2291.52 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
39. Eif5a ENSMUSG00000078812 216.69 2251.72 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. Rpl18a ENSMUSG00000045128 214.33 2227.20 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
41. Eif4g2 ENSMUSG00000005610 212.85 2211.82 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
42. mt-Nd3 ENSMUSG00000064360 206.37 2144.48 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
43. H19 ENSMUSG00000000031 201.36 2092.42 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
44. Eef1b2 ENSMUSG00000025967 199.29 2070.91 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
45. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 199.29 2070.91 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
46. Rps26 ENSMUSG00000025362 178.66 1856.53 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
47. mt-Nd2 ENSMUSG00000064345 178.07 1850.40 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
48. Rps20 ENSMUSG00000028234 172.17 1789.09 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Fkbp1a ENSMUSG00000032966 171.58 1782.96 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
50. Hba-a2 ENSMUSG00000069917 171.58 1782.96 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
51. Atp5g3 ENSMUSG00000018770 170.11 1767.69 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
52. Ybx1 ENSMUSG00000028639 165.98 1724.77 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
53. Rps9 ENSMUSG00000006333 165.39 1718.64 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
54. Serbp1 ENSMUSG00000036371 164.21 1706.38 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
55. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 163.03 1694.11 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
56. Rpl8 ENSMUSG00000003970 160.67 1669.59 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
57. Ran ENSMUSG00000029430 158.31 1645.07 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
58. Gm8292 ENSMUSG00000100215 155.66 1617.53 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
59. Ncl ENSMUSG00000026234 154.19 1602.25 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
60. Ccnd2 ENSMUSG00000000184 151.53 1574.61 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
61. Crabp1 ENSMUSG00000032291 148.29 1540.95 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
62. Hmga2 ENSMUSG00000056758 144.16 1498.03 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
63. Rps5 ENSMUSG00000012848 135.61 1409.18 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
64. Gm5805 ENSMUSG00000061848 132.37 1375.51 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
65. Cfl1 ENSMUSG00000056201 129.13 1341.85 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
66. Hnrnpc ENSMUSG00000060373 129.13 1341.85 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
67. Ldha ENSMUSG00000063229 127.95 1329.58 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
68. Rrm2 ENSMUSG00000020649 127.95 1329.58 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
69. Trim28 ENSMUSG00000005566 127.65 1326.47 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
70. Stmn1 ENSMUSG00000028832 124.41 1292.80 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
71. Pabpc1 ENSMUSG00000022283 123.53 1283.65 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
72. Ywhab ENSMUSG00000018326 121.76 1265.26 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
73. Rps3a1 ENSMUSG00000028081 120.87 1256.01 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
74. 2810417H13Rik 118.22 1228.47 RIKEN cDNA 2810417H13 gene
75. Cadm1 ENSMUSG00000032076 117.63 1222.34 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
76. Eef1g ENSMUSG00000071644 117.63 1222.34 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
77. Cdk4 ENSMUSG00000006728 117.04 1216.21 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
78. Gm13340 ENSMUSG00000083563 116.75 1213.20 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
79. Nedd4 ENSMUSG00000032216 114.98 1194.81 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
80. Pcbp1 ENSMUSG00000051695 113.50 1179.43 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
81. Ckb ENSMUSG00000001270 113.21 1176.41 creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
82. Igf2 ENSMUSG00000048583 111.14 1154.90 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
83. Son ENSMUSG00000022961 110.55 1148.77 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
84. Myl6 ENSMUSG00000090841 108.20 1124.35 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
85. Grb10 ENSMUSG00000020176 107.31 1115.10 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
86. Hspe1 ENSMUSG00000073676 107.02 1112.09 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
87. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 106.13 1102.84 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
88. Gnb2l1 Gnb2l1 105.84 1099.83
89. Rpl32 ENSMUSG00000057841 105.25 1093.70 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
90. Cox8a ENSMUSG00000035885 104.66 1087.57 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
91. Marcks ENSMUSG00000069662 103.18 1072.19 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
92. Hnrnpk ENSMUSG00000021546 102.59 1066.06 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
93. Prdx1 ENSMUSG00000028691 102.30 1063.04 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
94. Banf1 ENSMUSG00000024844 102.00 1059.93 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
95. H2afy ENSMUSG00000015937 101.71 1056.91 H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]
96. Btf3 ENSMUSG00000021660 100.83 1047.77 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
97. Gm14586 ENSMUSG00000083621 99.35 1032.39 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
98. Anp32b ENSMUSG00000028333 99.06 1029.38 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
99. Hnrnpa1 ENSMUSG00000046434 98.76 1026.26 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
100. Cdkn1c ENSMUSG00000037664 98.17 1020.13 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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