Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s56.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Nd1 ENSMUSG00000064341 2485.20 25823.55 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
2. mt-Cytb ENSMUSG00000064370 2273.99 23628.88 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 1907.90 19824.86 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Co1 ENSMUSG00000064351 1745.98 18142.36 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
5. Ptma ENSMUSG00000026238 1703.73 17703.35 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Atp6 ENSMUSG00000064357 1696.69 17630.20 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Nd4 ENSMUSG00000064363 1457.33 15143.02 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
8. mt-Co2 ENSMUSG00000064354 1316.52 13679.87 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. Actb ENSMUSG00000029580 781.47 8120.20 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. H19 ENSMUSG00000000031 704.02 7315.43 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Co3 ENSMUSG00000064358 675.86 7022.82 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. mt-Nd2 ENSMUSG00000064345 605.46 6291.30 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Eef1a1 ENSMUSG00000037742 584.34 6071.84 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Igf2 ENSMUSG00000048583 570.26 5925.53 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Rpsa ENSMUSG00000032518 535.06 5559.77 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. mt-Nd3 ENSMUSG00000064360 520.98 5413.47 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
17. Gm13340 ENSMUSG00000083563 464.65 4828.15 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Nd5 ENSMUSG00000064367 450.57 4681.84 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. mt-Rnr1 ENSMUSG00000064337 394.25 4096.63 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Mdk ENSMUSG00000027239 380.17 3950.32 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Npm1 ENSMUSG00000057113 337.93 3511.41 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tubb5 ENSMUSG00000001525 337.93 3511.41 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Col1a1 ENSMUSG00000001506 281.61 2926.19 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
24. Tuba1b ENSMUSG00000023004 281.61 2926.19 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Rpl23 ENSMUSG00000071415 260.49 2706.73 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
26. Tuba1a ENSMUSG00000072235 253.45 2633.58 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
27. Rpl18a ENSMUSG00000045128 225.29 2340.97 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
28. Hmga2 ENSMUSG00000056758 218.25 2267.82 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
29. Meg3 ENSMUSG00000021268 218.25 2267.82 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
30. Rpl4 ENSMUSG00000032399 211.21 2194.67 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Crabp1 ENSMUSG00000032291 204.17 2121.52 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
32. Gm10800 ENSMUSG00000075014 204.17 2121.52 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
33. Hmgn1 ENSMUSG00000040681 204.17 2121.52 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
34. Pkm ENSMUSG00000032294 197.13 2048.37 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Eef1b2 ENSMUSG00000025967 190.09 1975.21 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
36. Rplp1 ENSMUSG00000007892 190.09 1975.21 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
37. Serbp1 ENSMUSG00000036371 190.09 1975.21 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
38. Chchd2 ENSMUSG00000070493 183.05 1902.06 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Col1a2 ENSMUSG00000029661 183.05 1902.06 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
40. Ubb ENSMUSG00000019505 183.05 1902.06 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
41. Gm17132 ENSMUSG00000061331 176.01 1828.91 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
42. Rps26 ENSMUSG00000025362 176.01 1828.91 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
43. Rps4x ENSMUSG00000031320 176.01 1828.91 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
44. Gm5805 ENSMUSG00000061848 168.97 1755.76 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
45. Tmsb4x ENSMUSG00000049775 168.97 1755.76 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
46. Cdkn1c ENSMUSG00000037664 161.93 1682.60 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
47. Grb10 ENSMUSG00000020176 154.88 1609.35 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
48. Tpt1 ENSMUSG00000060126 154.88 1609.35 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
49. Set ENSMUSG00000054766 147.84 1536.20 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
50. Morf4l2 ENSMUSG00000031422 140.80 1463.04 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
51. Myl6 ENSMUSG00000090841 140.80 1463.04 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
52. Serpinh1 ENSMUSG00000070436 140.80 1463.04 serine (or cysteine) peptidase inhibitor, clade H, member 1 [Source:MGI Symbol;Acc:MGI:88283]
53. Son ENSMUSG00000022961 140.80 1463.04 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
54. Eef2 ENSMUSG00000034994 133.76 1389.89 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
55. Eif4g2 ENSMUSG00000005610 133.76 1389.89 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
56. Fkbp1a ENSMUSG00000032966 133.76 1389.89 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Hsp90aa1 ENSMUSG00000021270 133.76 1389.89 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
58. Hsp90ab1 ENSMUSG00000023944 133.76 1389.89 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
59. Malat1 ENSMUSG00000092341 133.76 1389.89 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
60. Rps5 ENSMUSG00000012848 133.76 1389.89 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
61. Gm8292 ENSMUSG00000100215 126.72 1316.74 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
62. Hnrnpc ENSMUSG00000060373 126.72 1316.74 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
63. Nedd4 ENSMUSG00000032216 126.72 1316.74 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
64. Calm1 ENSMUSG00000001175 119.68 1243.59 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
65. Ddx5 ENSMUSG00000020719 119.68 1243.59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
66. Gpc3 ENSMUSG00000055653 119.68 1243.59 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
67. Igfbp4 ENSMUSG00000017493 119.68 1243.59 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
68. Lamp1 ENSMUSG00000031447 119.68 1243.59 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
69. Rpl8 ENSMUSG00000003970 119.68 1243.59 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
70. Rps20 ENSMUSG00000028234 119.68 1243.59 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
71. Rps9 ENSMUSG00000006333 119.68 1243.59 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
72. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 119.68 1243.59 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
73. Tac2 ENSMUSG00000025400 119.68 1243.59 tachykinin 2 [Source:MGI Symbol;Acc:MGI:98476]
74. Cltc ENSMUSG00000047126 112.64 1170.43 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
75. Eif5a ENSMUSG00000078812 112.64 1170.43 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
76. Hnrnpa0 ENSMUSG00000007836 112.64 1170.43 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
77. Ldha ENSMUSG00000063229 112.64 1170.43 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
78. Ngfrap1 112.64 1170.43 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
79. Wbp5 112.64 1170.43 WW domain binding protein 5
80. Ago2 ENSMUSG00000036698 105.60 1097.28 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
81. Eef1g ENSMUSG00000071644 105.60 1097.28 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
82. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 105.60 1097.28 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
83. Prdx1 ENSMUSG00000028691 105.60 1097.28 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
84. Rps3a1 ENSMUSG00000028081 105.60 1097.28 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
85. Trim28 ENSMUSG00000005566 105.60 1097.28 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
86. Atp5g3 ENSMUSG00000018770 98.56 1024.13 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
87. Col3a1 ENSMUSG00000026043 98.56 1024.13 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
88. Gm14303 ENSMUSG00000081344 98.56 1024.13 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
89. Hnrnpa1 ENSMUSG00000046434 98.56 1024.13 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
90. Morf4l1 ENSMUSG00000062270 98.56 1024.13 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
91. Pdia6 ENSMUSG00000020571 98.56 1024.13 protein disulfide isomerase associated 6 [Source:MGI Symbol;Acc:MGI:1919103]
92. Rpl13 ENSMUSG00000000740 98.56 1024.13 ribosomal protein L13 [Source:MGI Symbol;Acc:MGI:105922]
93. Rpl36a-ps1 ENSMUSG00000060377 98.56 1024.13 ribosomal protein L36A, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3642585]
94. Sparc ENSMUSG00000018593 98.56 1024.13 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
95. Atxn7l3b ENSMUSG00000074748 91.52 950.98 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
96. Cd24a ENSMUSG00000047139 91.52 950.98 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
97. Fstl1 ENSMUSG00000022816 91.52 950.98 follistatin-like 1 [Source:MGI Symbol;Acc:MGI:102793]
98. Gm10076 ENSMUSG00000060143 91.52 950.98 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
99. Gm14586 ENSMUSG00000083621 91.52 950.98 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
100. Itm2a ENSMUSG00000031239 91.52 950.98 integral membrane protein 2A [Source:MGI Symbol;Acc:MGI:107706]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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