Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s54.

Sample reads: 96,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 2125.53 22082.66 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 1943.17 20188.07 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd1 ENSMUSG00000064341 1321.36 13727.93 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. Actb ENSMUSG00000029580 1085.19 11274.31 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
5. mt-Co2 ENSMUSG00000064354 989.52 10280.37 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Cytb ENSMUSG00000064370 819.12 8510.04 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
7. H19 ENSMUSG00000000031 813.14 8447.91 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Atp6 ENSMUSG00000064357 687.58 7143.44 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
9. Mdk ENSMUSG00000027239 678.62 7050.35 midkine [Source:MGI Symbol;Acc:MGI:96949]
10. mt-Co1 ENSMUSG00000064351 657.69 6832.90 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd4 ENSMUSG00000064363 627.79 6522.27 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Eef1a1 ENSMUSG00000037742 618.83 6429.18 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Igf2 ENSMUSG00000048583 600.89 6242.79 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Rpsa ENSMUSG00000032518 576.97 5994.28 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Tubb5 ENSMUSG00000001525 508.21 5279.92 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
16. mt-Co3 ENSMUSG00000064358 475.33 4938.32 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. mt-Nd3 ENSMUSG00000064360 370.70 3851.29 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
18. mt-Rnr1 ENSMUSG00000064337 328.84 3416.40 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
19. mt-Nd2 ENSMUSG00000064345 322.87 3354.38 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
20. mt-Nd5 ENSMUSG00000064367 322.87 3354.38 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Hmga2 ENSMUSG00000056758 292.97 3043.74 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Hbb-y ENSMUSG00000052187 284.00 2950.55 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
23. Col1a2 ENSMUSG00000029661 281.01 2919.48 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
24. Tuba1b ENSMUSG00000023004 278.02 2888.42 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Gm17132 ENSMUSG00000061331 275.03 2857.35 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
26. Rpl23 ENSMUSG00000071415 275.03 2857.35 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
27. Gm10800 ENSMUSG00000075014 269.05 2795.23 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
28. Meg3 ENSMUSG00000021268 260.09 2702.14 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
29. Pkm ENSMUSG00000032294 257.10 2671.08 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Hsp90ab1 ENSMUSG00000023944 251.12 2608.95 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Rpl18a ENSMUSG00000045128 227.20 2360.44 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
32. Cdkn1c ENSMUSG00000037664 224.21 2329.37 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
33. Rps4x ENSMUSG00000031320 224.21 2329.37 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
34. Tuba1a ENSMUSG00000072235 218.23 2267.25 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
35. Chchd2 ENSMUSG00000070493 209.26 2174.05 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
36. Npm1 ENSMUSG00000057113 203.29 2112.03 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
37. Set ENSMUSG00000054766 200.30 2080.97 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
38. Igfbp4 ENSMUSG00000017493 194.32 2018.84 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
39. Col1a1 ENSMUSG00000001506 185.35 1925.65 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
40. Rps20 ENSMUSG00000028234 185.35 1925.65 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Eif4g2 ENSMUSG00000005610 182.36 1894.58 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
42. Gm13340 ENSMUSG00000083563 182.36 1894.58 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
43. Hmgn1 ENSMUSG00000040681 179.37 1863.52 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
44. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 170.40 1770.33 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
45. Tpt1 ENSMUSG00000060126 170.40 1770.33 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
46. Ywhab ENSMUSG00000018326 170.40 1770.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
47. Rpl4 ENSMUSG00000032399 167.41 1739.26 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
48. Peg3 ENSMUSG00000002265 164.42 1708.20 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
49. Rplp1 ENSMUSG00000007892 164.42 1708.20 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
50. Rps26 ENSMUSG00000025362 164.42 1708.20 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Myl6 ENSMUSG00000090841 161.43 1677.14 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
52. Tmsb4x ENSMUSG00000049775 161.43 1677.14 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
53. Son ENSMUSG00000022961 158.44 1646.07 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
54. Gm26870 ENSMUSG00000097312 155.45 1615.01 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
55. Gm5805 ENSMUSG00000061848 155.45 1615.01 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
56. Gm8292 ENSMUSG00000100215 155.45 1615.01 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
57. Ubb ENSMUSG00000019505 152.46 1583.94 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
58. Eef1b2 ENSMUSG00000025967 149.47 1552.88 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
59. Trim28 ENSMUSG00000005566 149.47 1552.88 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
60. Pcbp1 ENSMUSG00000051695 143.50 1490.86 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
61. Eef2 ENSMUSG00000034994 140.51 1459.79 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
62. Grb10 ENSMUSG00000020176 140.51 1459.79 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
63. Rps9 ENSMUSG00000006333 140.51 1459.79 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
64. Rpl8 ENSMUSG00000003970 134.53 1397.67 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
65. Eif5a ENSMUSG00000078812 131.54 1366.60 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
66. Malat1 ENSMUSG00000092341 131.54 1366.60 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
67. Nedd4 ENSMUSG00000032216 131.54 1366.60 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
68. Tsc22d1 ENSMUSG00000022010 131.54 1366.60 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
69. Atp5g3 ENSMUSG00000018770 125.56 1304.47 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
70. Fkbp1a ENSMUSG00000032966 122.57 1273.41 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
71. Fstl1 ENSMUSG00000022816 119.58 1242.35 follistatin-like 1 [Source:MGI Symbol;Acc:MGI:102793]
72. Marcks ENSMUSG00000069662 119.58 1242.35 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
73. Wbp5 119.58 1242.35 WW domain binding protein 5
74. Gpc3 ENSMUSG00000055653 116.59 1211.28 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
75. Hba-a1 ENSMUSG00000069919 116.59 1211.28 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
76. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 113.60 1180.22 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
77. Calm1 ENSMUSG00000001175 110.61 1149.15 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
78. Eef1g ENSMUSG00000071644 110.61 1149.15 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
79. Cfl1 ENSMUSG00000056201 104.63 1087.03 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
80. Rps3a1 ENSMUSG00000028081 104.63 1087.03 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
81. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 101.64 1055.96 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
82. Serbp1 ENSMUSG00000036371 101.64 1055.96 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
83. Sparc ENSMUSG00000018593 101.64 1055.96 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
84. Ddx5 ENSMUSG00000020719 98.65 1024.90 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
85. Lamp1 ENSMUSG00000031447 98.65 1024.90 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
86. Mapre1 ENSMUSG00000027479 98.65 1024.90 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
87. Sfrp1 ENSMUSG00000031548 98.65 1024.90 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
88. Asb4 ENSMUSG00000042607 95.66 993.84 ankyrin repeat and SOCS box-containing 4 [Source:MGI Symbol;Acc:MGI:1929751]
89. Gm21897 ENSMUSG00000094472 95.66 993.84 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
90. Ldha ENSMUSG00000063229 95.66 993.84 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
91. Anp32b ENSMUSG00000028333 92.67 962.77 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
92. Cdk4 ENSMUSG00000006728 92.67 962.77 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
93. Flna ENSMUSG00000031328 92.67 962.77 filamin, alpha [Source:MGI Symbol;Acc:MGI:95556]
94. H3f3b ENSMUSG00000016559 92.67 962.77 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
95. Hnrnpa0 ENSMUSG00000007836 92.67 962.77 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
96. Rps5 ENSMUSG00000012848 92.67 962.77 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
97. Serpinh1 ENSMUSG00000070436 92.67 962.77 serine (or cysteine) peptidase inhibitor, clade H, member 1 [Source:MGI Symbol;Acc:MGI:88283]
98. Vcp ENSMUSG00000028452 92.67 962.77 valosin containing protein [Source:MGI Symbol;Acc:MGI:99919]
99. Atp5a1 ENSMUSG00000025428, ENSMUSG00000116276 89.68 931.71 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 [Source:MGI Symbol;Acc:MGI:88115]
100. Banf1 ENSMUSG00000024844 89.68 931.71 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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