Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s52.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 1799.39 18695.62 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 1780.06 18494.78 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 1499.81 15582.99 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 1465.02 15221.52 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Rnr2 ENSMUSG00000064339 1408.97 14639.16 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
6. mt-Nd4 ENSMUSG00000064363 1397.38 14518.74 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1310.40 13615.02 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Actb ENSMUSG00000029580 1101.67 11446.32 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
9. mt-Co2 ENSMUSG00000064354 999.23 10381.97 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
10. Hbb-y ENSMUSG00000052187 788.56 8193.12 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. mt-Co3 ENSMUSG00000064358 711.25 7389.87 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Igf2 ENSMUSG00000048583 622.34 6466.10 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Mdk ENSMUSG00000027239 581.76 6044.47 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Eef1a1 ENSMUSG00000037742 579.82 6024.31 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. H19 ENSMUSG00000000031 568.23 5903.90 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. mt-Nd3 ENSMUSG00000064360 454.20 4719.13 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
17. Tubb5 ENSMUSG00000001525 448.40 4658.86 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
18. mt-Nd5 ENSMUSG00000064367 429.07 4458.03 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. mt-Nd2 ENSMUSG00000064345 421.34 4377.71 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
20. Rpsa ENSMUSG00000032518 384.62 3996.19 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Gm13340 ENSMUSG00000083563 371.09 3855.62 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Tuba1b ENSMUSG00000023004 355.63 3694.99 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Ubb ENSMUSG00000019505 264.79 2751.16 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
24. Rpl23 ENSMUSG00000071415 255.12 2650.69 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
25. Tuba1a ENSMUSG00000072235 255.12 2650.69 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
26. Meg3 ENSMUSG00000021268 249.32 2590.43 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
27. Pkm ENSMUSG00000032294 239.66 2490.06 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Npm1 ENSMUSG00000057113 237.73 2470.01 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
29. Hba-a1 ENSMUSG00000069919 222.27 2309.38 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
30. Chchd2 ENSMUSG00000070493 208.74 2168.80 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 197.14 2048.28 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
32. Hba-x ENSMUSG00000055609 195.21 2028.23 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
33. Hmgn1 ENSMUSG00000040681 187.48 1947.91 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
34. Tpt1 ENSMUSG00000060126 183.61 1907.70 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Hmga2 ENSMUSG00000056758 181.68 1887.65 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
36. Rpl4 ENSMUSG00000032399 181.68 1887.65 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Hsp90ab1 ENSMUSG00000023944 179.75 1867.60 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Set ENSMUSG00000054766 179.75 1867.60 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
39. Hbb-bh1 ENSMUSG00000052217 177.81 1847.44 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
40. Sfrp1 ENSMUSG00000031548 177.81 1847.44 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
41. Col1a2 ENSMUSG00000029661 173.95 1807.34 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
42. Peg3 ENSMUSG00000002265 170.08 1767.13 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
43. Igfbp4 ENSMUSG00000017493 168.15 1747.07 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
44. Atp5g3 ENSMUSG00000018770 166.22 1727.02 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Eef1b2 ENSMUSG00000025967 164.28 1706.86 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Fkbp1a ENSMUSG00000032966 164.28 1706.86 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
47. Grb10 ENSMUSG00000020176 158.49 1646.71 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
48. Myl6 ENSMUSG00000090841 158.49 1646.71 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
49. Ywhab ENSMUSG00000018326 156.55 1626.55 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. mt-Rnr1 ENSMUSG00000064337 156.55 1626.55 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
51. Crabp1 ENSMUSG00000032291 152.69 1586.45 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
52. Eif4g2 ENSMUSG00000005610 152.69 1586.45 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
53. Rpl18a ENSMUSG00000045128 152.69 1586.45 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
54. Rps20 ENSMUSG00000028234 152.69 1586.45 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
55. Cdk4 ENSMUSG00000006728 146.89 1526.18 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
56. Eif5a ENSMUSG00000078812 141.09 1465.92 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
57. Col3a1 ENSMUSG00000026043 139.16 1445.87 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
58. Rplp1 ENSMUSG00000007892 133.36 1385.61 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
59. Gm8292 ENSMUSG00000100215 131.43 1365.55 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
60. Rps9 ENSMUSG00000006333 131.43 1365.55 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
61. Sparc ENSMUSG00000018593 131.43 1365.55 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
62. Cfl1 ENSMUSG00000056201 129.49 1345.40 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
63. Rps4x ENSMUSG00000031320 127.56 1325.35 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
64. Tmsb4x ENSMUSG00000049775 125.63 1305.29 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
65. Hnrnpc ENSMUSG00000060373 123.70 1285.24 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
66. Lamp1 ENSMUSG00000031447 123.70 1285.24 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
67. Rps26 ENSMUSG00000025362 123.70 1285.24 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
68. Rps5 ENSMUSG00000012848 123.70 1285.24 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
69. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 121.76 1265.08 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
70. Ngfrap1 121.76 1265.08 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
71. Rps3a1 ENSMUSG00000028081 121.76 1265.08 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
72. Col1a1 ENSMUSG00000001506 119.83 1245.03 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
73. Plagl1 ENSMUSG00000019817 117.90 1224.98 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
74. Rpl8 ENSMUSG00000003970 117.90 1224.98 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
75. Son ENSMUSG00000022961 117.90 1224.98 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
76. Cdkn1c ENSMUSG00000037664 115.96 1204.82 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
77. Hba-a2 ENSMUSG00000069917 114.03 1184.77 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
78. Hnrnpk ENSMUSG00000021546 114.03 1184.77 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
79. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 110.17 1144.66 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
80. Serpinh1 ENSMUSG00000070436 110.17 1144.66 serine (or cysteine) peptidase inhibitor, clade H, member 1 [Source:MGI Symbol;Acc:MGI:88283]
81. Gm5805 ENSMUSG00000061848 108.23 1124.51 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
82. Gpc3 ENSMUSG00000055653 106.30 1104.45 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
83. Wbp5 106.30 1104.45 WW domain binding protein 5
84. Eef1g ENSMUSG00000071644 104.37 1084.40 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
85. Eef2 ENSMUSG00000034994 104.37 1084.40 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
86. Nedd4 ENSMUSG00000032216 104.37 1084.40 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
87. Pcbp1 ENSMUSG00000051695 104.37 1084.40 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
88. Tsc22d1 ENSMUSG00000022010 104.37 1084.40 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
89. Ybx1 ENSMUSG00000028639 102.44 1064.35 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
90. Ncl ENSMUSG00000026234 98.57 1024.14 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
91. Ldha ENSMUSG00000063229 96.64 1004.09 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
92. Paics ENSMUSG00000029247 96.64 1004.09 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
93. Trim28 ENSMUSG00000005566 96.64 1004.09 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
94. Fscn1 ENSMUSG00000029581 94.70 983.93 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
95. Gm17132 ENSMUSG00000061331 94.70 983.93 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
96. H3f3b ENSMUSG00000016559 94.70 983.93 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
97. Hsp90aa1 ENSMUSG00000021270 94.70 983.93 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
98. Serbp1 ENSMUSG00000036371 94.70 983.93 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
99. Calm1 ENSMUSG00000001175 92.77 963.88 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
100. Igfbp5 ENSMUSG00000026185 92.77 963.88 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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