Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s50.

Sample reads: 96,259. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2066.06 21463.50 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 1631.30 16946.95 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 1621.51 16845.25 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd1 ENSMUSG00000064341 1451.14 15075.34 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Atp6 ENSMUSG00000064357 1435.47 14912.55 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Nd4 ENSMUSG00000064363 1423.72 14790.48 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. Hbb-y ENSMUSG00000052187 1110.38 11535.31 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
8. mt-Co2 ENSMUSG00000064354 1055.55 10965.70 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. Actb ENSMUSG00000029580 1047.72 10884.36 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Co1 ENSMUSG00000064351 1047.72 10884.36 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Eef1a1 ENSMUSG00000037742 667.80 6937.52 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. H19 ENSMUSG00000000031 663.88 6896.79 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Rpsa ENSMUSG00000032518 626.67 6510.23 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
14. mt-Nd5 ENSMUSG00000064367 597.30 6205.12 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
15. Mdk ENSMUSG00000027239 579.67 6021.97 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Co3 ENSMUSG00000064358 544.42 5655.77 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Igf2 ENSMUSG00000048583 481.75 5004.72 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. mt-Nd3 ENSMUSG00000064360 444.55 4618.26 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
19. Hba-x ENSMUSG00000055609 432.79 4496.09 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
20. Hba-a1 ENSMUSG00000069919 397.54 4129.89 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
21. Tubb5 ENSMUSG00000001525 389.71 4048.55 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. mt-Nd2 ENSMUSG00000064345 352.50 3661.99 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
23. Gm13340 ENSMUSG00000083563 329.00 3417.85 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
24. Hbb-bh1 ENSMUSG00000052217 307.46 3194.08 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
25. Rpl23 ENSMUSG00000071415 268.29 2787.16 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
26. mt-Rnr1 ENSMUSG00000064337 252.63 2624.48 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
27. Npm1 ENSMUSG00000057113 240.88 2502.41 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Tuba1b ENSMUSG00000023004 236.96 2461.69 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Chchd2 ENSMUSG00000070493 235.00 2441.32 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
30. Tpt1 ENSMUSG00000060126 233.04 2420.96 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Col1a2 ENSMUSG00000029661 227.17 2359.98 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
32. Hsp90ab1 ENSMUSG00000023944 225.21 2339.62 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Tmsb4x ENSMUSG00000049775 213.46 2217.55 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
34. Meg3 ENSMUSG00000021268 209.54 2176.83 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
35. Hmgn1 ENSMUSG00000040681 207.58 2156.47 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
36. Rpl4 ENSMUSG00000032399 205.63 2136.21 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Rps4x ENSMUSG00000031320 197.79 2054.76 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
38. Eef1b2 ENSMUSG00000025967 195.83 2034.40 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
39. Sfrp1 ENSMUSG00000031548 195.83 2034.40 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
40. Ubb ENSMUSG00000019505 176.25 1830.99 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
41. Eef2 ENSMUSG00000034994 172.33 1790.27 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
42. Grb10 ENSMUSG00000020176 170.38 1770.01 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
43. Tuba1a ENSMUSG00000072235 168.42 1749.65 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
44. Peg3 ENSMUSG00000002265 166.46 1729.29 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
45. Set ENSMUSG00000054766 166.46 1729.29 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
46. Fkbp1a ENSMUSG00000032966 164.50 1708.93 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
47. Pkm ENSMUSG00000032294 164.50 1708.93 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
48. Rps3a1 ENSMUSG00000028081 164.50 1708.93 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
49. Myl6 ENSMUSG00000090841 160.58 1668.20 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
50. Rpl8 ENSMUSG00000003970 160.58 1668.20 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
51. Hba-a2 ENSMUSG00000069917 158.63 1647.95 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
52. Col1a1 ENSMUSG00000001506 156.67 1627.58 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
53. Col3a1 ENSMUSG00000026043 156.67 1627.58 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
54. Rpl18a ENSMUSG00000045128 156.67 1627.58 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
55. Gm5805 ENSMUSG00000061848 152.75 1586.86 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
56. Rplp1 ENSMUSG00000007892 148.83 1546.14 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
57. Gm17132 ENSMUSG00000061331 146.88 1525.88 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
58. Nedd4 ENSMUSG00000032216 146.88 1525.88 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
59. Rps26 ENSMUSG00000025362 146.88 1525.88 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
60. Cfl1 ENSMUSG00000056201 139.04 1444.43 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
61. Rps9 ENSMUSG00000006333 139.04 1444.43 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
62. Ywhab ENSMUSG00000018326 139.04 1444.43 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
63. Tpm1 ENSMUSG00000032366 137.08 1424.07 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
64. Gm8292 ENSMUSG00000100215 133.17 1383.45 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
65. Pabpc1 ENSMUSG00000022283 133.17 1383.45 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Rps20 ENSMUSG00000028234 133.17 1383.45 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
67. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 133.17 1383.45 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
68. Eif5a ENSMUSG00000078812 129.25 1342.73 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
69. Hsp90aa1 ENSMUSG00000021270 129.25 1342.73 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
70. Eif4g2 ENSMUSG00000005610 125.33 1302.01 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
71. Marcks ENSMUSG00000069662 125.33 1302.01 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
72. Ddx5 ENSMUSG00000020719 121.42 1261.39 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
73. Sparc ENSMUSG00000018593 121.42 1261.39 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
74. Lamp1 ENSMUSG00000031447 119.46 1241.02 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
75. Hmga2 ENSMUSG00000056758 117.50 1220.66 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
76. Son ENSMUSG00000022961 117.50 1220.66 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
77. Ngfrap1 109.67 1139.32 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
78. Atp5g3 ENSMUSG00000018770 107.71 1118.96 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
79. Cdk4 ENSMUSG00000006728 107.71 1118.96 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
80. Pcbp1 ENSMUSG00000051695 107.71 1118.96 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
81. Ybx1 ENSMUSG00000028639 107.71 1118.96 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
82. Rpl32 ENSMUSG00000057841 105.75 1098.60 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
83. Rps5 ENSMUSG00000012848 103.79 1078.23 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
84. Eef1g ENSMUSG00000071644 101.83 1057.87 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
85. Malat1 ENSMUSG00000092341 101.83 1057.87 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
86. Acta2 ENSMUSG00000035783 99.88 1037.61 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
87. Gpc3 ENSMUSG00000055653 99.88 1037.61 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
88. Igfbp4 ENSMUSG00000017493 99.88 1037.61 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
89. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 95.96 996.89 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
90. Mrfap1 ENSMUSG00000055302 95.96 996.89 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
91. Wbp5 95.96 996.89 WW domain binding protein 5
92. Anp32b ENSMUSG00000028333 92.04 956.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
93. Serbp1 ENSMUSG00000036371 92.04 956.17 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
94. Ywhae ENSMUSG00000020849 92.04 956.17 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
95. Calm1 ENSMUSG00000001175 90.08 935.81 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
96. Gm14586 ENSMUSG00000083621 90.08 935.81 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
97. Igfbp5 ENSMUSG00000026185 90.08 935.81 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
98. Rpl36a-ps1 ENSMUSG00000060377 90.08 935.81 ribosomal protein L36A, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3642585]
99. Hnrnpk ENSMUSG00000021546 88.13 915.55 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
100. Serpinh1 ENSMUSG00000070436 88.13 915.55 serine (or cysteine) peptidase inhibitor, clade H, member 1 [Source:MGI Symbol;Acc:MGI:88283]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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