Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s5.

Sample reads: 96,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 2248.90 23366.84 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 2161.64 22460.18 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 1638.04 17019.80 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. Hbb-y ENSMUSG00000052187 1472.75 15302.38 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
5. mt-Cytb ENSMUSG00000064370 1406.01 14608.93 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
6. mt-Nd1 ENSMUSG00000064341 1376.75 14304.91 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Nd4 ENSMUSG00000064363 1027.17 10672.65 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
8. mt-Co2 ENSMUSG00000064354 942.99 9797.99 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. mt-Co1 ENSMUSG00000064351 884.47 9189.95 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Eef1a1 ENSMUSG00000037742 765.89 7957.86 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. Rpsa ENSMUSG00000032518 759.22 7888.56 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
12. mt-Co3 ENSMUSG00000064358 571.85 5941.72 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Npm1 ENSMUSG00000057113 493.82 5130.96 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
14. Actb ENSMUSG00000029580 443.52 4608.33 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Tuba1b ENSMUSG00000023004 436.33 4533.62 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
16. Tubb5 ENSMUSG00000001525 428.12 4448.31 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
17. mt-Nd3 ENSMUSG00000064360 409.64 4256.30 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
18. mt-Nd2 ENSMUSG00000064345 392.18 4074.88 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
19. Set ENSMUSG00000054766 362.92 3770.86 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
20. Hbb-bh1 ENSMUSG00000052217 349.58 3632.26 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
21. Rpl23 ENSMUSG00000071415 345.47 3589.55 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
22. Rpl4 ENSMUSG00000032399 336.23 3493.55 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
23. Pkm ENSMUSG00000032294 334.69 3477.54 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Tmsb4x ENSMUSG00000049775 332.64 3456.24 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
25. mt-Nd5 ENSMUSG00000064367 329.04 3418.84 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
26. Tuba1a ENSMUSG00000072235 320.83 3333.53 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
27. Hsp90aa1 ENSMUSG00000021270 285.41 2965.51 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
28. Hba-a1 ENSMUSG00000069919 284.90 2960.21 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
29. Rplp1 ENSMUSG00000007892 282.85 2938.91 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
30. Chchd2 ENSMUSG00000070493 273.61 2842.90 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Rps4x ENSMUSG00000031320 268.47 2789.50 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
32. Gm13340 ENSMUSG00000083563 256.67 2666.89 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
33. Tpt1 ENSMUSG00000060126 256.67 2666.89 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Rpl18a ENSMUSG00000045128 249.99 2597.48 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
35. Eif4g2 ENSMUSG00000005610 241.78 2512.18 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Rps20 ENSMUSG00000028234 231.51 2405.47 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
37. Rps5 ENSMUSG00000012848 224.33 2330.87 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
38. Eef1b2 ENSMUSG00000025967 216.63 2250.86 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
39. Tubb2b ENSMUSG00000045136 216.11 2245.46 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
40. Hmgn1 ENSMUSG00000040681 212.52 2208.16 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
41. Ubb ENSMUSG00000019505 203.79 2117.45 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
42. Hsp90ab1 ENSMUSG00000023944 200.20 2080.15 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
43. Hnrnpc ENSMUSG00000060373 193.53 2010.84 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
44. mt-Rnr1 ENSMUSG00000064337 191.47 1989.44 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
45. Serbp1 ENSMUSG00000036371 187.37 1946.84 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
46. Hmga2 ENSMUSG00000056758 186.85 1941.44 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
47. Gm5805 ENSMUSG00000061848 179.15 1861.43 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
48. Ybx1 ENSMUSG00000028639 176.07 1829.43 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
49. Gm8292 ENSMUSG00000100215 174.02 1808.13 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
50. Hba-x ENSMUSG00000055609 174.02 1808.13 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
51. Atp5g3 ENSMUSG00000018770 172.99 1797.43 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
52. Mdk ENSMUSG00000027239 171.45 1781.42 midkine [Source:MGI Symbol;Acc:MGI:96949]
53. Rps26 ENSMUSG00000025362 162.21 1685.42 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
54. Rps3a1 ENSMUSG00000028081 162.21 1685.42 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
55. Ncl ENSMUSG00000026234 157.59 1637.41 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
56. Fkbp1a ENSMUSG00000032966 156.57 1626.82 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Eif5a ENSMUSG00000078812 150.92 1568.11 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
58. Rps9 ENSMUSG00000006333 149.38 1552.11 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
59. 2810417H13Rik 144.25 1498.81 RIKEN cDNA 2810417H13 gene
60. Crabp1 ENSMUSG00000032291 141.17 1466.80 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
61. H19 ENSMUSG00000000031 139.63 1450.80 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
62. Eef2 ENSMUSG00000034994 138.60 1440.10 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
63. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 138.60 1440.10 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
64. Rpl8 ENSMUSG00000003970 138.09 1434.80 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
65. Ccnd2 ENSMUSG00000000184 134.49 1397.40 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
66. Paics ENSMUSG00000029247 134.49 1397.40 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
67. Hspe1 ENSMUSG00000073676 132.95 1381.40 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
68. Ldha ENSMUSG00000063229 132.95 1381.40 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
69. Ran ENSMUSG00000029430 127.82 1328.09 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
70. Nedd4 ENSMUSG00000032216 125.77 1306.79 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
71. Hba-a2 ENSMUSG00000069917 125.25 1301.39 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
72. Rpl32 ENSMUSG00000057841 123.20 1280.09 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
73. Son ENSMUSG00000022961 122.69 1274.79 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
74. Rpl36a ENSMUSG00000079435 121.15 1258.79 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
75. Myl6 ENSMUSG00000090841 120.63 1253.39 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
76. Ywhab ENSMUSG00000018326 119.09 1237.39 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
77. Rpl26 ENSMUSG00000060938 118.58 1232.09 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
78. Btf3 ENSMUSG00000021660 117.04 1216.09 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
79. Gm5963 ENSMUSG00000052192 116.01 1205.38 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
80. Pabpc1 ENSMUSG00000022283 113.45 1178.78 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
81. Rpl36a-ps1 ENSMUSG00000060377 112.93 1173.38 ribosomal protein L36A, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3642585]
82. Pcbp1 ENSMUSG00000051695 112.42 1168.08 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
83. Prdx1 ENSMUSG00000028691 111.91 1162.78 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
84. Srsf3 ENSMUSG00000071172 111.91 1162.78 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
85. Rpl7 ENSMUSG00000043716 109.85 1141.38 ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073]
86. Gm14586 ENSMUSG00000083621 107.29 1114.78 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
87. Hnrnpk ENSMUSG00000021546 107.29 1114.78 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
88. Rpl39-ps ENSMUSG00000036305 107.29 1114.78 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
89. Eef1g ENSMUSG00000071644 106.26 1104.08 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
90. Rpl41 ENSMUSG00000093674 106.26 1104.08 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
91. Cfl1 ENSMUSG00000056201 105.75 1098.78 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
92. Banf1 ENSMUSG00000024844 105.23 1093.38 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
93. Gm10076 ENSMUSG00000060143 105.23 1093.38 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
94. Fkbp4 ENSMUSG00000030357 104.72 1088.08 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
95. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 104.72 1088.08 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
96. Arl6ip1 ENSMUSG00000030654 104.21 1082.78 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
97. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 104.21 1082.78 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
98. Hnrnpa1 ENSMUSG00000046434 102.67 1066.78 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
99. Rrm2 ENSMUSG00000020649 102.15 1061.37 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
100. Grb10 ENSMUSG00000020176 101.13 1050.78 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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