Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s49.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 2166.73 22510.04 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Hbb-y ENSMUSG00000052187 1803.85 18740.10 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
3. Ptma ENSMUSG00000026238 1788.79 18583.64 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Cytb ENSMUSG00000064370 1722.54 17895.37 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Nd1 ENSMUSG00000064341 1468.07 15251.70 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1416.88 14719.89 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Atp6 ENSMUSG00000064357 1374.72 14281.89 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Co1 ENSMUSG00000064351 1337.08 13890.85 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Actb ENSMUSG00000029580 1014.85 10543.22 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Co2 ENSMUSG00000064354 880.84 9151.00 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
11. mt-Nd5 ENSMUSG00000064367 819.11 8509.69 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Hba-a1 ENSMUSG00000069919 742.32 7711.92 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
13. Eef1a1 ENSMUSG00000037742 703.17 7305.19 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Hba-x ENSMUSG00000055609 665.53 6914.15 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
15. mt-Nd2 ENSMUSG00000064345 567.66 5897.39 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. mt-Co3 ENSMUSG00000064358 555.61 5772.20 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. H19 ENSMUSG00000000031 505.92 5255.97 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. Mdk ENSMUSG00000027239 501.40 5209.02 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Rpsa ENSMUSG00000032518 489.36 5083.93 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Hbb-bh1 ENSMUSG00000052217 487.85 5068.25 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
21. Tuba1b ENSMUSG00000023004 480.32 4990.02 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. mt-Nd3 ENSMUSG00000064360 471.29 4896.21 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
23. Igf2 ENSMUSG00000048583 465.27 4833.66 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
24. Tubb5 ENSMUSG00000001525 456.23 4739.75 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Gm13340 ENSMUSG00000083563 334.27 3472.71 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
26. Hba-a2 ENSMUSG00000069917 325.23 3378.80 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
27. Rpl23 ENSMUSG00000071415 266.51 2768.76 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
28. Hsp90ab1 ENSMUSG00000023944 254.47 2643.67 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Rpl4 ENSMUSG00000032399 251.45 2612.30 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Npm1 ENSMUSG00000057113 234.89 2440.26 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
31. Ubb ENSMUSG00000019505 224.35 2330.76 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Chchd2 ENSMUSG00000070493 218.33 2268.22 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
33. Hmgn1 ENSMUSG00000040681 216.82 2252.53 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
34. Rpl18a ENSMUSG00000045128 206.28 2143.03 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
35. Tmsb4x ENSMUSG00000049775 191.23 1986.68 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
36. Sfrp1 ENSMUSG00000031548 188.21 1955.30 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
37. Eef1b2 ENSMUSG00000025967 186.71 1939.72 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
38. Meg3 ENSMUSG00000021268 183.70 1908.45 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
39. Tuba1a ENSMUSG00000072235 183.70 1908.45 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
40. mt-Rnr1 ENSMUSG00000064337 182.19 1892.76 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
41. Myl6 ENSMUSG00000090841 180.69 1877.18 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
42. Fkbp1a ENSMUSG00000032966 179.18 1861.49 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
43. Pkm ENSMUSG00000032294 179.18 1861.49 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
44. Tpt1 ENSMUSG00000060126 179.18 1861.49 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
45. Grb10 ENSMUSG00000020176 177.67 1845.80 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
46. Col1a2 ENSMUSG00000029661 174.66 1814.53 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
47. Atp5g3 ENSMUSG00000018770 161.11 1673.76 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Peg3 ENSMUSG00000002265 158.10 1642.49 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
49. Col3a1 ENSMUSG00000026043 155.09 1611.22 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
50. Rps26 ENSMUSG00000025362 153.58 1595.53 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Set ENSMUSG00000054766 150.57 1564.26 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
52. Rplp1 ENSMUSG00000007892 149.07 1548.68 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
53. Eif4g2 ENSMUSG00000005610 144.55 1501.72 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
54. Rps20 ENSMUSG00000028234 141.54 1470.45 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
55. Eef1g ENSMUSG00000071644 138.53 1439.18 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
56. Eef2 ENSMUSG00000034994 138.53 1439.18 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
57. Rps4x ENSMUSG00000031320 137.02 1423.49 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
58. Ywhab ENSMUSG00000018326 134.01 1392.22 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
59. Nedd4 ENSMUSG00000032216 132.50 1376.54 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
60. Hmga2 ENSMUSG00000056758 131.00 1360.95 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
61. Rpl8 ENSMUSG00000003970 129.49 1345.26 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
62. Ybx1 ENSMUSG00000028639 127.99 1329.68 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
63. Gm17132 ENSMUSG00000061331 126.48 1313.99 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
64. Sparc ENSMUSG00000018593 120.46 1251.45 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
65. Tpm1 ENSMUSG00000032366 118.95 1235.76 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
66. Col1a1 ENSMUSG00000001506 117.45 1220.18 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
67. Eif5a ENSMUSG00000078812 117.45 1220.18 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
68. Igfbp4 ENSMUSG00000017493 112.93 1173.22 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
69. Pcbp1 ENSMUSG00000051695 111.42 1157.54 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
70. Rps5 ENSMUSG00000012848 111.42 1157.54 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
71. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 109.92 1141.95 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
72. Rps9 ENSMUSG00000006333 109.92 1141.95 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
73. Ngfrap1 106.91 1110.68 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
74. Pabpc1 ENSMUSG00000022283 105.40 1094.99 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Cdk4 ENSMUSG00000006728 103.89 1079.31 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
76. Gm5805 ENSMUSG00000061848 103.89 1079.31 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
77. Hsp90aa1 ENSMUSG00000021270 103.89 1079.31 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
78. Gm8292 ENSMUSG00000100215 102.39 1063.72 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
79. Rps3a1 ENSMUSG00000028081 99.38 1032.45 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
80. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 99.38 1032.45 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
81. Crabp1 ENSMUSG00000032291 97.87 1016.77 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
82. Gm10800 ENSMUSG00000075014 97.87 1016.77 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
83. Hnrnpc ENSMUSG00000060373 97.87 1016.77 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
84. Tsc22d1 ENSMUSG00000022010 97.87 1016.77 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
85. Wbp5 97.87 1016.77 WW domain binding protein 5
86. Igfbp5 ENSMUSG00000026185 96.37 1001.18 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
87. Malat1 ENSMUSG00000092341 93.35 969.81 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
88. Mapre1 ENSMUSG00000027479 93.35 969.81 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
89. Calm1 ENSMUSG00000001175 91.85 954.22 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
90. Cfl1 ENSMUSG00000056201 91.85 954.22 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
91. 2810417H13Rik 90.34 938.54 RIKEN cDNA 2810417H13 gene
92. Banf1 ENSMUSG00000024844 90.34 938.54 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
93. Ncl ENSMUSG00000026234 88.84 922.95 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
94. Ddx5 ENSMUSG00000020719 87.33 907.27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
95. Gnb2l1 Gnb2l1 87.33 907.27
96. Trim28 ENSMUSG00000005566 87.33 907.27 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
97. Cox8a ENSMUSG00000035885 85.83 891.68 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
98. Hnrnpa0 ENSMUSG00000007836 85.83 891.68 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
99. Rpl32 ENSMUSG00000057841 85.83 891.68 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
100. Serbp1 ENSMUSG00000036371 84.32 876.00 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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