Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s47.

Sample reads: 96,234. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2430.06 25251.82 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 1861.61 19344.81 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Nd1 ENSMUSG00000064341 1741.67 18098.46 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Cytb ENSMUSG00000064370 1554.15 16149.86 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Nd4 ENSMUSG00000064363 1322.72 13744.96 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1124.23 11682.37 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 1120.85 11647.24 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Co1 ENSMUSG00000064351 1076.93 11190.85 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Actb ENSMUSG00000029580 831.98 8645.47 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. Eef1a1 ENSMUSG00000037742 743.29 7723.85 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. mt-Nd3 ENSMUSG00000064360 720.49 7486.93 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Co3 ENSMUSG00000064358 630.95 6556.48 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Mdk ENSMUSG00000027239 625.04 6495.07 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Nd5 ENSMUSG00000064367 542.26 5634.86 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
15. H19 ENSMUSG00000000031 515.24 5354.09 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Rpsa ENSMUSG00000032518 473.85 4923.98 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
17. mt-Nd2 ENSMUSG00000064345 428.24 4450.03 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
18. Tubb5 ENSMUSG00000001525 418.10 4344.66 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
19. Hmga2 ENSMUSG00000056758 337.02 3502.12 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Igf2 ENSMUSG00000048583 337.02 3502.12 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
21. Gm13340 ENSMUSG00000083563 315.05 3273.82 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Tuba1b ENSMUSG00000023004 315.05 3273.82 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Ubb ENSMUSG00000019505 255.93 2659.48 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
24. Rpl23 ENSMUSG00000071415 253.39 2633.09 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
25. Chchd2 ENSMUSG00000070493 239.04 2483.97 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
26. Npm1 ENSMUSG00000057113 237.35 2466.41 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Rpl4 ENSMUSG00000032399 228.06 2369.87 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
28. Tpt1 ENSMUSG00000060126 225.52 2343.48 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Hmgn1 ENSMUSG00000040681 222.99 2317.19 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
30. mt-Rnr1 ENSMUSG00000064337 217.07 2255.67 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
31. Hsp90ab1 ENSMUSG00000023944 212.01 2203.09 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Set ENSMUSG00000054766 196.80 2045.04 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
33. Sfrp1 ENSMUSG00000031548 182.44 1895.81 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
34. Rpl18a ENSMUSG00000045128 179.91 1869.52 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
35. Rps4x ENSMUSG00000031320 179.07 1860.80 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
36. Tuba1a ENSMUSG00000072235 173.15 1799.28 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
37. Eif4g2 ENSMUSG00000005610 168.93 1755.43 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Eef1b2 ENSMUSG00000025967 164.71 1711.57 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
39. Peg3 ENSMUSG00000002265 163.86 1702.74 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
40. Pkm ENSMUSG00000032294 162.17 1685.18 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
41. Malat1 ENSMUSG00000092341 150.35 1562.35 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
42. Meg3 ENSMUSG00000021268 147.81 1535.96 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
43. Grb10 ENSMUSG00000020176 143.59 1492.11 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
44. Rps5 ENSMUSG00000012848 141.06 1465.82 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
45. Wbp5 141.06 1465.82 WW domain binding protein 5
46. Fkbp1a ENSMUSG00000032966 138.52 1439.42 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
47. Rps26 ENSMUSG00000025362 135.14 1404.30 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
48. Gm10800 ENSMUSG00000075014 134.30 1395.57 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
49. Son ENSMUSG00000022961 134.30 1395.57 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
50. Eef2 ENSMUSG00000034994 133.45 1386.74 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
51. Hbb-y ENSMUSG00000052187 133.45 1386.74 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
52. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 133.45 1386.74 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
53. Atp5g3 ENSMUSG00000018770 132.61 1378.01 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
54. Rps3a1 ENSMUSG00000028081 131.77 1369.28 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
55. Cdk4 ENSMUSG00000006728 130.08 1351.72 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
56. Gm17132 ENSMUSG00000061331 128.39 1334.16 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
57. Nedd4 ENSMUSG00000032216 124.16 1290.20 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
58. Gm5805 ENSMUSG00000061848 122.47 1272.64 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
59. Hsp90aa1 ENSMUSG00000021270 121.63 1263.91 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
60. Rps9 ENSMUSG00000006333 121.63 1263.91 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
61. Tmsb4x ENSMUSG00000049775 118.25 1228.79 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
62. Gm8292 ENSMUSG00000100215 117.41 1220.06 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
63. Rps20 ENSMUSG00000028234 117.41 1220.06 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
64. Ddx5 ENSMUSG00000020719 116.56 1211.23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
65. Rplp1 ENSMUSG00000007892 115.72 1202.50 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
66. Myl6 ENSMUSG00000090841 113.18 1176.10 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
67. Ywhab ENSMUSG00000018326 111.49 1158.54 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
68. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 110.65 1149.81 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
69. Cd24a ENSMUSG00000047139 108.96 1132.25 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
70. Eif5a ENSMUSG00000078812 108.12 1123.52 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
71. Stmn1 ENSMUSG00000028832 107.27 1114.69 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
72. Cfl1 ENSMUSG00000056201 104.74 1088.40 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
73. Rpl8 ENSMUSG00000003970 103.89 1079.57 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
74. Hnrnpk ENSMUSG00000021546 101.36 1053.28 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
75. Pabpc1 ENSMUSG00000022283 100.51 1044.44 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
76. Serbp1 ENSMUSG00000036371 100.51 1044.44 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
77. Eef1g ENSMUSG00000071644 98.82 1026.88 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
78. Col1a2 ENSMUSG00000029661 95.45 991.86 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
79. H3f3b ENSMUSG00000016559 95.45 991.86 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
80. Hnrnpa0 ENSMUSG00000007836 95.45 991.86 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
81. Pcbp1 ENSMUSG00000051695 95.45 991.86 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
82. Sparc ENSMUSG00000018593 95.45 991.86 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
83. Rpl32 ENSMUSG00000057841 92.07 956.74 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
84. Ybx1 ENSMUSG00000028639 92.07 956.74 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
85. Col3a1 ENSMUSG00000026043 91.22 947.91 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
86. Trim28 ENSMUSG00000005566 91.22 947.91 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
87. Ngfrap1 90.38 939.18 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
88. Cox8a ENSMUSG00000035885 88.69 921.62 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
89. Lamp1 ENSMUSG00000031447 87.00 904.06 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
90. Banf1 ENSMUSG00000024844 86.15 895.22 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
91. Ncl ENSMUSG00000026234 85.31 886.49 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
92. Tsc22d1 ENSMUSG00000022010 84.46 877.66 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
93. Hnrnpc ENSMUSG00000060373 83.62 868.93 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
94. Nasp ENSMUSG00000028693 81.93 851.37 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
95. Ran ENSMUSG00000029430 81.93 851.37 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
96. Igfbp4 ENSMUSG00000017493 81.09 842.64 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
97. Mrfap1 ENSMUSG00000055302 81.09 842.64 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
98. Paics ENSMUSG00000029247 79.40 825.08 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
99. Tpm1 ENSMUSG00000032366 79.40 825.08 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
100. Crabp1 ENSMUSG00000032291 78.55 816.25 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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