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Experiment Mouse_E10_5_slice_3, section s46.

Sample reads: 96,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 7842.34 81484.57 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 2619.45 27216.97 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2018.66 20974.56 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd3 ENSMUSG00000064360 1505.99 15647.75 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
5. mt-Nd1 ENSMUSG00000064341 1385.83 14399.24 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Cytb ENSMUSG00000064370 1265.67 13150.74 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
7. mt-Co2 ENSMUSG00000064354 1105.46 11486.10 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd4 ENSMUSG00000064363 1089.44 11319.65 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
9. mt-Co1 ENSMUSG00000064351 712.94 7407.69 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Actb ENSMUSG00000029580 688.91 7158.01 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Co3 ENSMUSG00000064358 680.90 7074.78 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Eef1a1 ENSMUSG00000037742 672.89 6991.56 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Rpsa ENSMUSG00000032518 496.65 5160.36 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
14. Hmga2 ENSMUSG00000056758 456.60 4744.23 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
15. Tpt1 ENSMUSG00000060126 448.59 4661.00 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
16. H19 ENSMUSG00000000031 432.57 4494.55 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
17. Npm1 ENSMUSG00000057113 432.57 4494.55 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
18. mt-Nd2 ENSMUSG00000064345 344.45 3578.95 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
19. Hsp90aa1 ENSMUSG00000021270 336.44 3495.73 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
20. Hmgn1 ENSMUSG00000040681 312.41 3246.05 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
21. Igf2 ENSMUSG00000048583 312.41 3246.05 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. Gm5805 ENSMUSG00000061848 288.38 2996.37 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
23. Rpl23 ENSMUSG00000071415 288.38 2996.37 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
24. mt-Rnr1 ENSMUSG00000064337 264.35 2746.69 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
25. Tubb5 ENSMUSG00000001525 256.34 2663.46 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Ddx3x ENSMUSG00000000787 248.33 2580.23 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
27. Malat1 ENSMUSG00000092341 248.33 2580.23 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
28. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 240.32 2497.01 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
29. Mdk ENSMUSG00000027239 240.32 2497.01 midkine [Source:MGI Symbol;Acc:MGI:96949]
30. Eif4g2 ENSMUSG00000005610 224.30 2330.55 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Peg3 ENSMUSG00000002265 216.29 2247.33 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
32. mt-Nd5 ENSMUSG00000064367 216.29 2247.33 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
33. Wbp5 200.26 2080.77 WW domain binding protein 5
34. Chchd2 ENSMUSG00000070493 192.25 1997.54 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Rpl4 ENSMUSG00000032399 184.24 1914.32 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
36. Tmsb4x ENSMUSG00000049775 184.24 1914.32 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
37. Ubb ENSMUSG00000019505 184.24 1914.32 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
38. Rps20 ENSMUSG00000028234 176.23 1831.09 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
39. Rps4x ENSMUSG00000031320 176.23 1831.09 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
40. Caprin1 ENSMUSG00000027184 168.22 1747.86 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
41. Set ENSMUSG00000054766 168.22 1747.86 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
42. Pabpc1 ENSMUSG00000022283 160.21 1664.64 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
43. Tuba1b ENSMUSG00000023004 160.21 1664.64 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
44. Cd24a ENSMUSG00000047139 152.20 1581.41 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
45. Eef1b2 ENSMUSG00000025967 152.20 1581.41 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Gm14586 ENSMUSG00000083621 152.20 1581.41 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
47. Gm8292 ENSMUSG00000100215 152.20 1581.41 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
48. Rpl32 ENSMUSG00000057841 152.20 1581.41 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
49. Ywhab ENSMUSG00000018326 152.20 1581.41 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Atp5g3 ENSMUSG00000018770 144.19 1498.18 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
51. Col3a1 ENSMUSG00000026043 144.19 1498.18 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
52. Gm5963 ENSMUSG00000052192 144.19 1498.18 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
53. Ptges3 ENSMUSG00000071072 144.19 1498.18 prostaglandin E synthase 3 [Source:MGI Symbol;Acc:MGI:1929282]
54. Rps3a1 ENSMUSG00000028081 144.19 1498.18 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
55. Son ENSMUSG00000022961 144.19 1498.18 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
56. Grb10 ENSMUSG00000020176 136.18 1414.96 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
57. Fstl1 ENSMUSG00000022816 128.17 1331.73 follistatin-like 1 [Source:MGI Symbol;Acc:MGI:102793]
58. Gm9846 Gm9846 128.17 1331.73
59. Hnrnpk ENSMUSG00000021546 128.17 1331.73 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
60. Rps9 ENSMUSG00000006333 128.17 1331.73 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
61. Tmpo ENSMUSG00000019961 128.17 1331.73 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
62. Ddx5 ENSMUSG00000020719 120.16 1248.50 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
63. Eef2 ENSMUSG00000034994 120.16 1248.50 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
64. Flrt3 ENSMUSG00000051379 120.16 1248.50 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
65. H3f3b ENSMUSG00000016559 120.16 1248.50 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
66. Nedd4 ENSMUSG00000032216 120.16 1248.50 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
67. Rpl18a ENSMUSG00000045128 120.16 1248.50 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
68. Rrm2 ENSMUSG00000020649 120.16 1248.50 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
69. Hnrnpc ENSMUSG00000060373 112.15 1165.28 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
70. Ndufa4 ENSMUSG00000029632 112.15 1165.28 Ndufa4, mitochondrial complex associated [Source:MGI Symbol;Acc:MGI:107686]
71. Nepn ENSMUSG00000038624 112.15 1165.28 nephrocan [Source:MGI Symbol;Acc:MGI:1913900]
72. Pkm ENSMUSG00000032294 112.15 1165.28 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
73. Dek ENSMUSG00000021377 104.14 1082.05 DEK oncogene (DNA binding) [Source:MGI Symbol;Acc:MGI:1926209]
74. Gm13340 ENSMUSG00000083563 104.14 1082.05 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
75. Hmgb1 ENSMUSG00000066551 104.14 1082.05 high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113]
76. Hsp90ab1 ENSMUSG00000023944 104.14 1082.05 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
77. Hspe1 ENSMUSG00000073676 104.14 1082.05 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
78. Lamp1 ENSMUSG00000031447 104.14 1082.05 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
79. Marcks ENSMUSG00000069662 104.14 1082.05 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
80. Matr3 ENSMUSG00000037236 104.14 1082.05 matrin 3 [Source:MGI Symbol;Acc:MGI:1298379]
81. Rpl36a-ps1 ENSMUSG00000060377 104.14 1082.05 ribosomal protein L36A, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3642585]
82. Rps15 ENSMUSG00000063457 104.14 1082.05 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
83. Serbp1 ENSMUSG00000036371 104.14 1082.05 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
84. Csde1 ENSMUSG00000068823 96.13 998.82 cold shock domain containing E1, RNA binding [Source:MGI Symbol;Acc:MGI:92356]
85. Gnb2l1 Gnb2l1 96.13 998.82
86. Hbb-bh1 ENSMUSG00000052217 96.13 998.82 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
87. Hnrnpa0 ENSMUSG00000007836 96.13 998.82 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
88. Ldha ENSMUSG00000063229 96.13 998.82 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
89. Paics ENSMUSG00000029247 96.13 998.82 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
90. Rpl26 ENSMUSG00000060938 96.13 998.82 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
91. Rps26 ENSMUSG00000025362 96.13 998.82 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
92. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 96.13 998.82 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
93. Top1 ENSMUSG00000070544 96.13 998.82 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
94. Atp5j2 ENSMUSG00000038690 88.12 915.60 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 [Source:MGI Symbol;Acc:MGI:1927558]
95. Gm2000 ENSMUSG00000078193 88.12 915.60 predicted gene 2000 [Source:MGI Symbol;Acc:MGI:3780170]
96. Itgb1 ENSMUSG00000025809 88.12 915.60 integrin beta 1 (fibronectin receptor beta) [Source:MGI Symbol;Acc:MGI:96610]
97. Pbrm1 ENSMUSG00000042323 88.12 915.60 polybromo 1 [Source:MGI Symbol;Acc:MGI:1923998]
98. Pcbp1 ENSMUSG00000051695 88.12 915.60 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
99. Ptp4a1 ENSMUSG00000026064, ENSMUSG00000117310 88.12 915.60 protein tyrosine phosphatase 4a1 [Source:NCBI gene;Acc:19243]
100. Ran ENSMUSG00000029430 88.12 915.60 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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