Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s41.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3138.16 32606.98 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 1695.96 17621.83 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 1498.01 15565.04 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Nd4 ENSMUSG00000064363 1346.20 13987.66 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 1265.09 13144.89 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Co1 ENSMUSG00000064351 1044.07 10848.39 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
7. mt-Co2 ENSMUSG00000064354 994.21 10330.32 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Rnr2 ENSMUSG00000064339 783.24 8138.24 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Actb ENSMUSG00000029580 781.38 8118.91 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. Eef1a1 ENSMUSG00000037742 773.56 8037.66 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. mt-Co3 ENSMUSG00000064358 663.80 6897.20 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Mdk ENSMUSG00000027239 549.20 5706.45 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Nd3 ENSMUSG00000064360 536.54 5574.91 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Rpsa ENSMUSG00000032518 510.50 5304.34 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Hmga2 ENSMUSG00000056758 487.43 5064.63 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
16. Tubb5 ENSMUSG00000001525 414.50 4306.85 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
17. Gm13340 ENSMUSG00000083563 350.13 3638.02 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. H19 ENSMUSG00000000031 349.39 3630.33 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. Tuba1b ENSMUSG00000023004 349.39 3630.33 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Npm1 ENSMUSG00000057113 323.71 3363.50 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Rpl4 ENSMUSG00000032399 313.29 3255.23 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
22. Ubb ENSMUSG00000019505 298.41 3100.62 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
23. Hmgn1 ENSMUSG00000040681 286.88 2980.82 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
24. Set ENSMUSG00000054766 275.71 2864.76 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
25. Chchd2 ENSMUSG00000070493 274.23 2849.38 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
26. Rpl23 ENSMUSG00000071415 255.62 2656.01 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
27. Tpt1 ENSMUSG00000060126 249.30 2590.35 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. mt-Nd2 ENSMUSG00000064345 224.74 2335.16 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
29. mt-Nd5 ENSMUSG00000064367 217.67 2261.70 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
30. Hsp90ab1 ENSMUSG00000023944 213.95 2223.04 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Rps4x ENSMUSG00000031320 203.90 2118.62 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
32. Igf2 ENSMUSG00000048583 191.62 1991.02 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
33. Wbp5 191.25 1987.18 WW domain binding protein 5
34. Tuba1a ENSMUSG00000072235 190.51 1979.49 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
35. Rpl18a ENSMUSG00000045128 189.76 1971.70 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
36. Eef1b2 ENSMUSG00000025967 187.53 1948.53 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
37. Rps20 ENSMUSG00000028234 185.67 1929.20 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
38. Eif4g2 ENSMUSG00000005610 180.09 1871.22 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Gm8292 ENSMUSG00000100215 180.09 1871.22 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
40. Rplp1 ENSMUSG00000007892 173.39 1801.60 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
41. Hsp90aa1 ENSMUSG00000021270 168.93 1755.26 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
42. Grb10 ENSMUSG00000020176 164.46 1708.82 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
43. Rps26 ENSMUSG00000025362 160.74 1670.17 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
44. Fkbp1a ENSMUSG00000032966 158.51 1646.99 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
45. Ngfrap1 154.41 1604.39 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
46. Rps3a1 ENSMUSG00000028081 149.58 1554.21 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
47. Eef2 ENSMUSG00000034994 147.35 1531.04 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
48. Stmn1 ENSMUSG00000028832 144.74 1503.92 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
49. Atp5g3 ENSMUSG00000018770 144.37 1500.07 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
50. Eif5a ENSMUSG00000078812 142.51 1480.75 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
51. Hbb-y ENSMUSG00000052187 140.65 1461.42 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
52. Son ENSMUSG00000022961 138.42 1438.25 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
53. Rps5 ENSMUSG00000012848 136.18 1414.98 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
54. Pabpc1 ENSMUSG00000022283 132.83 1380.17 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
55. Serbp1 ENSMUSG00000036371 132.83 1380.17 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
56. Ywhab ENSMUSG00000018326 132.83 1380.17 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
57. Ybx1 ENSMUSG00000028639 130.97 1360.84 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
58. Pkm ENSMUSG00000032294 126.14 1310.65 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
59. Gm5805 ENSMUSG00000061848 125.76 1306.71 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
60. Nedd4 ENSMUSG00000032216 125.02 1299.02 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
61. Ccnd2 ENSMUSG00000000184 124.65 1295.17 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
62. Cd24a ENSMUSG00000047139 124.28 1291.33 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
63. Hnrnpc ENSMUSG00000060373 123.90 1287.38 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
64. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 123.90 1287.38 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
65. Mrfap1 ENSMUSG00000055302 122.79 1275.85 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
66. Rpl8 ENSMUSG00000003970 121.67 1264.21 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
67. Ncl ENSMUSG00000026234 120.93 1256.52 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
68. Meg3 ENSMUSG00000021268 116.09 1206.23 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
69. Pcbp1 ENSMUSG00000051695 116.09 1206.23 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
70. Hnrnpk ENSMUSG00000021546 114.60 1190.75 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
71. Rps9 ENSMUSG00000006333 113.86 1183.06 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
72. Peg3 ENSMUSG00000002265 110.51 1148.25 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
73. Ddx5 ENSMUSG00000020719 109.39 1136.61 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
74. H3f3b ENSMUSG00000016559 107.90 1121.13 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
75. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 107.53 1117.29 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
76. Ran ENSMUSG00000029430 106.79 1109.60 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
77. Cdk4 ENSMUSG00000006728 106.42 1105.75 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
78. Banf1 ENSMUSG00000024844 105.30 1094.12 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
79. Eef1g ENSMUSG00000071644 104.18 1082.48 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
80. Rpl32 ENSMUSG00000057841 100.09 1039.98 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
81. Cox8a ENSMUSG00000035885 99.72 1036.14 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
82. Hnrnpa0 ENSMUSG00000007836 96.74 1005.17 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
83. Hspe1 ENSMUSG00000073676 96.74 1005.17 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
84. Sub1 ENSMUSG00000022205 96.74 1005.17 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
85. Pdia6 ENSMUSG00000020571 94.14 978.16 protein disulfide isomerase associated 6 [Source:MGI Symbol;Acc:MGI:1919103]
86. Myl6 ENSMUSG00000090841 93.02 966.52 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
87. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 92.28 958.83 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
88. Hnrnpa1 ENSMUSG00000046434 91.90 954.88 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
89. Lamp1 ENSMUSG00000031447 90.42 939.51 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
90. Scd2 ENSMUSG00000025203 90.42 939.51 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
91. Tmsb4x ENSMUSG00000049775 90.42 939.51 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
92. Gnb2l1 Gnb2l1 89.67 931.71
93. Pbx1 ENSMUSG00000052534 88.56 920.18 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
94. Atp5a1 ENSMUSG00000025428, ENSMUSG00000116276 88.18 916.23 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 [Source:MGI Symbol;Acc:MGI:88115]
95. Gm14586 ENSMUSG00000083621 88.18 916.23 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
96. Trim28 ENSMUSG00000005566 88.18 916.23 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
97. Anp32b ENSMUSG00000028333 87.44 908.54 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
98. Sparc ENSMUSG00000018593 87.07 904.70 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
99. Sod1 ENSMUSG00000022982 86.70 900.85 superoxide dismutase 1, soluble [Source:MGI Symbol;Acc:MGI:98351]
100. Sfrp1 ENSMUSG00000031548 85.95 893.06 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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