Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s4.

Sample reads: 96,232. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2652.59 27564.49 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 1352.06 14049.98 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 1116.33 11600.39 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Nd4 ENSMUSG00000064363 1078.21 11204.26 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 1036.42 10770.00 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Rnr2 ENSMUSG00000064339 1016.14 10559.26 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
7. Eef1a1 ENSMUSG00000037742 862.14 8958.96 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
8. mt-Co2 ENSMUSG00000064354 859.70 8933.60 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. Hbb-y ENSMUSG00000052187 796.42 8276.03 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Co1 ENSMUSG00000064351 769.58 7997.12 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Actb ENSMUSG00000029580 656.74 6824.54 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Rpsa ENSMUSG00000032518 648.36 6737.46 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
13. Tuba1b ENSMUSG00000023004 457.75 4756.73 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
14. mt-Co3 ENSMUSG00000064358 457.45 4753.61 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Tubb5 ENSMUSG00000001525 446.16 4636.29 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
16. Npm1 ENSMUSG00000057113 431.22 4481.04 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
17. Tuba1a ENSMUSG00000072235 407.13 4230.71 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
18. Set ENSMUSG00000054766 346.75 3603.27 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
19. Rpl4 ENSMUSG00000032399 335.46 3485.95 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
20. mt-Nd3 ENSMUSG00000064360 284.69 2958.37 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
21. Hba-x ENSMUSG00000055609 282.70 2937.69 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
22. Hba-a1 ENSMUSG00000069919 282.09 2931.35 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. Tmsb4x ENSMUSG00000049775 276.30 2871.18 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
24. Ubb ENSMUSG00000019505 273.10 2837.93 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Mdk ENSMUSG00000027239 267.00 2774.54 midkine [Source:MGI Symbol;Acc:MGI:96949]
26. Hmgn1 ENSMUSG00000040681 258.76 2688.91 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
27. Tpt1 ENSMUSG00000060126 257.54 2676.24 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Tubb2b ENSMUSG00000045136 257.54 2676.24 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
29. Rps4x ENSMUSG00000031320 252.97 2628.75 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
30. Rplp1 ENSMUSG00000007892 250.07 2598.61 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
31. Chchd2 ENSMUSG00000070493 248.39 2581.15 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
32. Hsp90aa1 ENSMUSG00000021270 241.23 2506.75 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
33. Eif4g2 ENSMUSG00000005610 236.20 2454.48 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Rpl23 ENSMUSG00000071415 231.93 2410.11 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
35. mt-Nd2 ENSMUSG00000064345 226.13 2349.84 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
36. Hsp90ab1 ENSMUSG00000023944 223.08 2318.14 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Gm13340 ENSMUSG00000083563 220.79 2294.35 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
38. mt-Nd5 ENSMUSG00000064367 220.49 2291.23 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
39. Hbb-bh1 ENSMUSG00000052217 214.85 2232.62 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
40. Pkm ENSMUSG00000032294 214.70 2231.06 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
41. Rpl18a ENSMUSG00000045128 201.43 2093.17 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
42. Atp5g3 ENSMUSG00000018770 197.92 2056.69 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
43. Eif5a ENSMUSG00000078812 196.70 2044.02 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
44. Rps20 ENSMUSG00000028234 196.55 2042.46 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. Rrm2 ENSMUSG00000020649 187.40 1947.37 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
46. Fkbp1a ENSMUSG00000032966 185.27 1925.24 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
47. Eef1b2 ENSMUSG00000025967 182.52 1896.66 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. Ybx1 ENSMUSG00000028639 177.03 1839.61 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
49. Rps26 ENSMUSG00000025362 172.61 1793.68 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
50. Crabp1 ENSMUSG00000032291 170.17 1768.33 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
51. Hnrnpc ENSMUSG00000060373 167.43 1739.86 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
52. Ran ENSMUSG00000029430 165.14 1716.06 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Eef2 ENSMUSG00000034994 163.77 1701.82 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
54. Gm8292 ENSMUSG00000100215 159.50 1657.45 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
55. Serbp1 ENSMUSG00000036371 159.04 1652.67 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
56. Ncl ENSMUSG00000026234 156.60 1627.31 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
57. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 153.86 1598.84 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
58. Rps5 ENSMUSG00000012848 150.20 1560.81 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
59. H19 ENSMUSG00000000031 149.89 1557.59 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
60. Rps9 ENSMUSG00000006333 143.49 1491.08 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
61. Nedd4 ENSMUSG00000032216 140.74 1462.50 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
62. Rps3a1 ENSMUSG00000028081 140.44 1459.39 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
63. Hmga2 ENSMUSG00000056758 139.67 1451.39 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
64. Pcbp1 ENSMUSG00000051695 138.15 1435.59 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
65. Ccnd2 ENSMUSG00000000184 132.20 1373.76 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
66. Rpl8 ENSMUSG00000003970 131.75 1369.09 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
67. Hba-a2 ENSMUSG00000069917 130.37 1354.74 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
68. Ldha ENSMUSG00000063229 129.00 1340.51 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
69. Gm5963 ENSMUSG00000052192 128.85 1338.95 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
70. Pabpc1 ENSMUSG00000022283 128.54 1335.73 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
71. Hnrnpk ENSMUSG00000021546 127.02 1319.93 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
72. Btf3 ENSMUSG00000021660 125.49 1304.03 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
73. Son ENSMUSG00000022961 122.44 1272.34 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
74. Hspe1 ENSMUSG00000073676 119.09 1237.53 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
75. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 118.17 1227.97 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
76. Srsf3 ENSMUSG00000071172 117.11 1216.95 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
77. Ywhab ENSMUSG00000018326 115.12 1196.27 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
78. Prdx1 ENSMUSG00000028691 114.82 1193.16 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
79. Gm5805 ENSMUSG00000061848 114.51 1189.93 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
80. Stmn1 ENSMUSG00000028832 114.36 1188.38 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
81. Rpl41 ENSMUSG00000093674 112.07 1164.58 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
82. Map1b ENSMUSG00000052727 111.16 1155.12 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
83. Cox8a ENSMUSG00000035885 110.09 1144.00 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
84. Cdk4 ENSMUSG00000006728 109.94 1142.45 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
85. Hnrnpa1 ENSMUSG00000046434 109.03 1132.99 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
86. Rpl32 ENSMUSG00000057841 108.87 1131.33 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
87. Grb10 ENSMUSG00000020176 108.11 1123.43 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
88. Ddx5 ENSMUSG00000020719 107.35 1115.53 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
89. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 106.89 1110.75 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
90. Hnrnpa0 ENSMUSG00000007836 105.82 1099.63 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
91. Paics ENSMUSG00000029247 105.52 1096.52 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
92. Banf1 ENSMUSG00000024844 104.76 1088.62 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
93. Trim28 ENSMUSG00000005566 103.99 1080.62 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
94. Eef1g ENSMUSG00000071644 103.69 1077.50 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
95. Cfl1 ENSMUSG00000056201 102.77 1067.94 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
96. Mrfap1 ENSMUSG00000055302 102.32 1063.26 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
97. Gm15459 ENSMUSG00000100801 101.86 1058.48 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
98. 2810417H13Rik 101.55 1055.26 RIKEN cDNA 2810417H13 gene
99. Calm1 ENSMUSG00000001175 98.35 1022.01 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
100. Ckb ENSMUSG00000001270 98.35 1022.01 creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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