Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s39.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2232.29 23195.63 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 1830.40 19019.61 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 1445.97 15025.01 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 1436.08 14922.24 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd1 ENSMUSG00000064341 1348.97 14017.09 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Rnr2 ENSMUSG00000064339 869.01 9029.84 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
7. Eef1a1 ENSMUSG00000037742 786.53 8172.80 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
8. mt-Co1 ENSMUSG00000064351 714.57 7425.07 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Co2 ENSMUSG00000064354 710.99 7387.87 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
10. mt-Co3 ENSMUSG00000064358 699.84 7272.01 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Tubb5 ENSMUSG00000001525 652.08 6775.73 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
12. Actb ENSMUSG00000029580 610.83 6347.11 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Tuba1b ENSMUSG00000023004 603.89 6274.99 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
14. Hmga2 ENSMUSG00000056758 556.13 5778.72 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
15. Mdk ENSMUSG00000027239 495.95 5153.39 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Nd3 ENSMUSG00000064360 477.22 4958.77 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
17. Rpsa ENSMUSG00000032518 473.85 4923.75 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. H19 ENSMUSG00000000031 347.39 3609.71 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. Npm1 ENSMUSG00000057113 333.09 3461.12 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Rpl23 ENSMUSG00000071415 300.26 3119.99 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
21. mt-Nd2 ENSMUSG00000064345 300.26 3119.99 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
22. Set ENSMUSG00000054766 298.16 3098.17 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
23. Chchd2 ENSMUSG00000070493 280.69 2916.64 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
24. Rpl4 ENSMUSG00000032399 277.75 2886.09 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
25. Hmgn1 ENSMUSG00000040681 271.01 2816.05 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
26. mt-Nd5 ENSMUSG00000064367 268.70 2792.05 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
27. Ubb ENSMUSG00000019505 265.96 2763.58 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Pkm ENSMUSG00000032294 226.83 2356.98 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Rps4x ENSMUSG00000031320 218.62 2271.67 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
30. Tpt1 ENSMUSG00000060126 214.41 2227.92 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Igf2 ENSMUSG00000048583 214.20 2225.74 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
32. Eif4g2 ENSMUSG00000005610 209.15 2173.27 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Hsp90ab1 ENSMUSG00000023944 205.58 2136.17 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Eef1b2 ENSMUSG00000025967 202.84 2107.70 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
35. Hsp90aa1 ENSMUSG00000021270 194.00 2015.85 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
36. Gm13340 ENSMUSG00000083563 192.95 2004.93 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
37. Hbb-y ENSMUSG00000052187 189.16 1965.55 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
38. Tuba1a ENSMUSG00000072235 185.80 1930.64 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
39. Rpl18a ENSMUSG00000045128 184.11 1913.08 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
40. Atp5g3 ENSMUSG00000018770 174.43 1812.49 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
41. Wbp5 171.07 1777.58 WW domain binding protein 5
42. Rplp1 ENSMUSG00000007892 170.23 1768.85 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
43. Rps20 ENSMUSG00000028234 166.65 1731.65 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
44. Grb10 ENSMUSG00000020176 162.44 1687.91 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Fkbp1a ENSMUSG00000032966 154.23 1602.60 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
46. Ngfrap1 153.60 1596.05 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
47. Eif5a ENSMUSG00000078812 152.34 1582.96 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
48. Rps26 ENSMUSG00000025362 151.29 1572.05 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. Ywhab ENSMUSG00000018326 146.87 1526.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Serbp1 ENSMUSG00000036371 143.92 1495.47 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
51. Rps5 ENSMUSG00000012848 143.50 1491.10 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
52. Gm8292 ENSMUSG00000100215 142.24 1478.01 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
53. Hnrnpc ENSMUSG00000060373 137.61 1429.90 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
54. Ncl ENSMUSG00000026234 136.98 1423.35 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
55. Rps9 ENSMUSG00000006333 136.77 1421.17 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
56. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 136.77 1421.17 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
57. Rpl8 ENSMUSG00000003970 131.51 1366.51 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
58. Eef1g ENSMUSG00000071644 127.72 1327.13 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
59. Gm5805 ENSMUSG00000061848 127.72 1327.13 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
60. Nedd4 ENSMUSG00000032216 126.88 1318.40 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
61. Cd24a ENSMUSG00000047139 126.67 1316.22 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
62. Son ENSMUSG00000022961 126.25 1311.86 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
63. Peg3 ENSMUSG00000002265 124.57 1294.40 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
64. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 123.72 1285.57 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
65. Myl6 ENSMUSG00000090841 123.09 1279.02 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
66. Ccnd2 ENSMUSG00000000184 122.67 1274.66 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
67. Rps3a1 ENSMUSG00000028081 122.25 1270.29 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
68. Eef2 ENSMUSG00000034994 122.04 1268.11 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
69. Ybx1 ENSMUSG00000028639 120.78 1255.02 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
70. Pbx1 ENSMUSG00000052534 119.73 1244.11 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
71. Mrfap1 ENSMUSG00000055302 118.67 1233.09 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
72. Stmn1 ENSMUSG00000028832 118.67 1233.09 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
73. Ran ENSMUSG00000029430 117.83 1224.37 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
74. Trim28 ENSMUSG00000005566 116.78 1213.46 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
75. Ddx5 ENSMUSG00000020719 115.73 1202.55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
76. Pabpc1 ENSMUSG00000022283 114.68 1191.63 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
77. Cdk4 ENSMUSG00000006728 114.47 1189.45 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
78. Pcbp1 ENSMUSG00000051695 111.52 1158.80 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
79. mt-Rnr1 ENSMUSG00000064337 111.10 1154.44 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
80. Cfl1 ENSMUSG00000056201 109.63 1139.16 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
81. Prdx1 ENSMUSG00000028691 108.78 1130.33 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
82. Meg3 ENSMUSG00000021268 108.15 1123.78 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
83. Hspe1 ENSMUSG00000073676 107.94 1121.60 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
84. Hnrnpk ENSMUSG00000021546 101.42 1053.85 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
85. Banf1 ENSMUSG00000024844 98.68 1025.38 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
86. Nasp ENSMUSG00000028693 97.21 1010.10 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
87. Cox8a ENSMUSG00000035885 97.00 1007.92 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
88. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 96.37 1001.38 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
89. H3f3b ENSMUSG00000016559 96.16 999.19 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
90. Paics ENSMUSG00000029247 95.95 997.01 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
91. Srsf3 ENSMUSG00000071172 95.74 994.83 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
92. Lamp1 ENSMUSG00000031447 94.90 986.10 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
93. Gnb2l1 Gnb2l1 94.27 979.56
94. Rpl32 ENSMUSG00000057841 93.21 968.54 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
95. Gm10076 ENSMUSG00000060143 92.58 961.99 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
96. Calm1 ENSMUSG00000001175 92.16 957.63 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
97. Pdia6 ENSMUSG00000020571 92.16 957.63 protein disulfide isomerase associated 6 [Source:MGI Symbol;Acc:MGI:1919103]
98. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 91.11 946.72 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
99. Hnrnpa1 ENSMUSG00000046434 89.85 933.63 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
100. Btf3 ENSMUSG00000021660 89.64 931.45 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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