Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s38.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4139.07 43004.79 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 2126.06 22089.69 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 1744.88 18129.24 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Cytb ENSMUSG00000064370 1731.73 17992.62 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Nd1 ENSMUSG00000064341 1683.10 17487.35 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1347.27 13998.09 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co2 ENSMUSG00000064354 1275.63 13253.75 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. Hmga2 ENSMUSG00000056758 875.40 9095.38 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
9. mt-Co3 ENSMUSG00000064358 853.71 8870.02 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. mt-Co1 ENSMUSG00000064351 774.84 8050.56 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd3 ENSMUSG00000064360 692.69 7197.03 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Rpsa ENSMUSG00000032518 672.98 6992.24 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
13. Eef1a1 ENSMUSG00000037742 667.06 6930.73 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Actb ENSMUSG00000029580 625.66 6500.59 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Mdk ENSMUSG00000027239 437.04 4540.83 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Npm1 ENSMUSG00000057113 434.41 4513.50 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
17. Set ENSMUSG00000054766 362.12 3762.41 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
18. H19 ENSMUSG00000000031 340.43 3537.06 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. mt-Nd2 ENSMUSG00000064345 337.15 3502.98 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
20. mt-Nd5 ENSMUSG00000064367 331.23 3441.47 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Rpl23 ENSMUSG00000071415 327.95 3407.39 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
22. Tpt1 ENSMUSG00000060126 307.57 3195.64 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
23. Tubb5 ENSMUSG00000001525 295.74 3072.73 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
24. Hmgn1 ENSMUSG00000040681 267.48 2779.11 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
25. Rps4x ENSMUSG00000031320 256.97 2669.91 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
26. Hsp90aa1 ENSMUSG00000021270 255.00 2649.44 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
27. Chchd2 ENSMUSG00000070493 249.08 2587.93 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
28. Igf2 ENSMUSG00000048583 243.82 2533.28 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
29. Rpl18a ENSMUSG00000045128 243.82 2533.28 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
30. Eif4g2 ENSMUSG00000005610 240.54 2499.20 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. mt-Rnr1 ENSMUSG00000064337 228.05 2369.43 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
32. Gm8292 ENSMUSG00000100215 226.08 2348.96 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
33. Rpl4 ENSMUSG00000032399 214.25 2226.05 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Wbp5 205.05 2130.46 WW domain binding protein 5
35. Gm5805 ENSMUSG00000061848 203.08 2109.99 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
36. Ywhab ENSMUSG00000018326 199.79 2075.81 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
37. Pkm ENSMUSG00000032294 197.82 2055.34 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
38. Tuba1b ENSMUSG00000023004 197.82 2055.34 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
39. Gm13340 ENSMUSG00000083563 193.88 2014.41 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
40. Serbp1 ENSMUSG00000036371 189.27 1966.51 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
41. Hsp90ab1 ENSMUSG00000023944 188.62 1959.76 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
42. Rplp1 ENSMUSG00000007892 186.65 1939.29 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
43. Rps20 ENSMUSG00000028234 186.65 1939.29 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
44. Pbx1 ENSMUSG00000052534 176.79 1836.84 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
45. Rps3a1 ENSMUSG00000028081 165.62 1720.79 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
46. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 161.02 1672.99 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
47. Hbb-y ENSMUSG00000052187 159.04 1652.42 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
48. Ubb ENSMUSG00000019505 157.07 1631.95 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
49. Eif5a ENSMUSG00000078812 155.10 1611.48 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
50. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 155.10 1611.48 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
51. Rps26 ENSMUSG00000025362 154.44 1604.63 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Eef1b2 ENSMUSG00000025967 153.79 1597.87 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
53. Eef2 ENSMUSG00000034994 152.47 1584.16 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
54. Fkbp1a ENSMUSG00000032966 145.90 1515.90 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
55. Rps5 ENSMUSG00000012848 143.93 1495.43 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
56. Peg3 ENSMUSG00000002265 141.96 1474.96 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
57. Ngfrap1 141.30 1468.10 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
58. Myl6 ENSMUSG00000090841 140.64 1461.24 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
59. Rps9 ENSMUSG00000006333 140.64 1461.24 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
60. Gm10800 ENSMUSG00000075014 139.98 1454.39 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
61. Rpl8 ENSMUSG00000003970 136.04 1413.45 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
62. Rrm2 ENSMUSG00000020649 133.41 1386.13 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
63. 2810417H13Rik 132.10 1372.51 RIKEN cDNA 2810417H13 gene
64. Atp5g3 ENSMUSG00000018770 128.81 1338.33 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
65. Gm14586 ENSMUSG00000083621 127.50 1324.72 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
66. Hnrnpc ENSMUSG00000060373 127.50 1324.72 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
67. Ran ENSMUSG00000029430 126.18 1311.01 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
68. Rpl36a-ps1 ENSMUSG00000060377 124.87 1297.39 ribosomal protein L36A, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3642585]
69. Rpl26 ENSMUSG00000060938 122.24 1270.07 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
70. Pabpc1 ENSMUSG00000022283 120.93 1256.46 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
71. Rpl36a ENSMUSG00000079435 120.27 1249.60 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
72. Cd24a ENSMUSG00000047139 118.95 1235.89 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
73. Son ENSMUSG00000022961 118.95 1235.89 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
74. Grb10 ENSMUSG00000020176 118.30 1229.13 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
75. Ccnd2 ENSMUSG00000000184 117.64 1222.28 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
76. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 116.98 1215.42 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
77. Gm5963 ENSMUSG00000052192 115.67 1201.81 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
78. Nedd4 ENSMUSG00000032216 115.67 1201.81 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
79. Ybx1 ENSMUSG00000028639 115.67 1201.81 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
80. Ddx3x ENSMUSG00000000787 115.01 1194.95 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
81. Ncl ENSMUSG00000026234 113.70 1181.34 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
82. Calm1 ENSMUSG00000001175 113.04 1174.48 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
83. Tmsb4x ENSMUSG00000049775 112.38 1167.62 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
84. Srsf3 ENSMUSG00000071172 109.10 1133.55 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
85. Hspa5 ENSMUSG00000026864 108.44 1126.69 heat shock protein 5 [Source:MGI Symbol;Acc:MGI:95835]
86. Tuba1a ENSMUSG00000072235 107.78 1119.83 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
87. Paics ENSMUSG00000029247 107.12 1112.97 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
88. Sub1 ENSMUSG00000022205 106.47 1106.22 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
89. Cdk4 ENSMUSG00000006728 105.15 1092.50 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
90. Nasp ENSMUSG00000028693 105.15 1092.50 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
91. Prdx1 ENSMUSG00000028691 105.15 1092.50 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
92. Rpl32 ENSMUSG00000057841 103.18 1072.04 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
93. Pcbp1 ENSMUSG00000051695 101.21 1051.57 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
94. Mrfap1 ENSMUSG00000055302 99.24 1031.10 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
95. H3f3b ENSMUSG00000016559 97.27 1010.63 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
96. Cfl1 ENSMUSG00000056201 96.61 1003.77 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
97. Eef1g ENSMUSG00000071644 96.61 1003.77 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
98. Fkbp4 ENSMUSG00000030357 96.61 1003.77 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
99. Marcks ENSMUSG00000069662 96.61 1003.77 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
100. Hnrnpk ENSMUSG00000021546 95.29 990.06 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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