Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s34.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2249.78 23373.85 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2229.38 23161.91 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 1841.84 19135.60 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1739.12 18068.41 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1511.32 15701.70 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co1 ENSMUSG00000064351 1133.86 11780.12 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
7. mt-Co2 ENSMUSG00000064354 975.35 10133.30 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. Eef1a1 ENSMUSG00000037742 770.16 8001.50 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
9. mt-Rnr2 ENSMUSG00000064339 727.64 7559.74 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. Actb ENSMUSG00000029580 708.23 7358.08 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Co3 ENSMUSG00000064358 640.41 6653.47 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Mdk ENSMUSG00000027239 616.08 6400.70 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. Hmga2 ENSMUSG00000056758 538.91 5598.95 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
14. Rpsa ENSMUSG00000032518 477.48 4960.73 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Tubb5 ENSMUSG00000001525 463.23 4812.68 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
16. mt-Nd5 ENSMUSG00000064367 452.90 4705.36 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
17. mt-Nd2 ENSMUSG00000064345 434.47 4513.88 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
18. mt-Nd3 ENSMUSG00000064360 404.98 4207.50 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
19. H19 ENSMUSG00000000031 382.13 3970.10 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
20. Npm1 ENSMUSG00000057113 346.99 3605.02 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Tuba1b ENSMUSG00000023004 329.54 3423.72 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Rpl23 ENSMUSG00000071415 297.59 3091.78 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
23. Set ENSMUSG00000054766 293.91 3053.55 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
24. Hmgn1 ENSMUSG00000040681 292.93 3043.37 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
25. Gm13340 ENSMUSG00000083563 285.31 2964.20 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
26. Rpl4 ENSMUSG00000032399 274.99 2856.98 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
27. Rpl18a ENSMUSG00000045128 266.63 2770.12 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
28. Igf2 ENSMUSG00000048583 263.44 2736.98 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
29. Pkm ENSMUSG00000032294 257.05 2670.59 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Chchd2 ENSMUSG00000070493 229.28 2382.08 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Rps4x ENSMUSG00000031320 216.75 2251.90 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
32. Ubb ENSMUSG00000019505 210.11 2182.92 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Eef1b2 ENSMUSG00000025967 208.14 2162.45 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
34. Hsp90ab1 ENSMUSG00000023944 207.90 2159.96 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Eif4g2 ENSMUSG00000005610 206.67 2147.18 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Tpt1 ENSMUSG00000060126 198.31 2060.32 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. Rps3a1 ENSMUSG00000028081 182.10 1891.91 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
38. Hsp90aa1 ENSMUSG00000021270 168.09 1746.35 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
39. Rplp1 ENSMUSG00000007892 164.40 1708.02 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
40. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 163.91 1702.93 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
41. Ngfrap1 153.59 1595.71 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
42. Grb10 ENSMUSG00000020176 152.36 1582.93 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
43. Tuba1a ENSMUSG00000072235 149.66 1554.88 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
44. mt-Rnr1 ENSMUSG00000064337 149.41 1552.28 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
45. Pbx1 ENSMUSG00000052534 149.17 1549.79 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
46. Son ENSMUSG00000022961 148.92 1547.19 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
47. Eif5a ENSMUSG00000078812 148.67 1544.59 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
48. Rps9 ENSMUSG00000006333 147.69 1534.41 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
49. Rps20 ENSMUSG00000028234 146.22 1519.14 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
50. Ncl ENSMUSG00000026234 145.48 1511.45 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
51. Serbp1 ENSMUSG00000036371 145.48 1511.45 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
52. Eef2 ENSMUSG00000034994 144.01 1496.18 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
53. Sfrp1 ENSMUSG00000031548 143.76 1493.58 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
54. Peg3 ENSMUSG00000002265 142.78 1483.40 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
55. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 138.84 1442.46 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
56. Rps5 ENSMUSG00000012848 137.37 1427.19 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
57. Wbp5 136.63 1419.50 WW domain binding protein 5
58. Gm8292 ENSMUSG00000100215 136.39 1417.01 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
59. Rpl8 ENSMUSG00000003970 133.68 1388.85 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
60. Eef1g ENSMUSG00000071644 133.44 1386.36 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
61. Ybx1 ENSMUSG00000028639 131.96 1370.98 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
62. Rps26 ENSMUSG00000025362 130.24 1353.11 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
63. Crabp1 ENSMUSG00000032291 128.28 1332.75 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
64. Ddx5 ENSMUSG00000020719 127.79 1327.66 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
65. Ywhab ENSMUSG00000018326 125.82 1307.19 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
66. Myl6 ENSMUSG00000090841 125.08 1299.51 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
67. Hnrnpc ENSMUSG00000060373 122.63 1274.05 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
68. Cdk4 ENSMUSG00000006728 122.38 1271.45 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
69. Atp5g3 ENSMUSG00000018770 121.89 1266.36 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
70. Trim28 ENSMUSG00000005566 119.43 1240.81 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
71. Nedd4 ENSMUSG00000032216 117.96 1225.53 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
72. Gm5805 ENSMUSG00000061848 117.22 1217.84 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
73. Fkbp1a ENSMUSG00000032966 116.24 1207.66 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
74. Meg3 ENSMUSG00000021268 111.81 1161.64 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
75. Cfl1 ENSMUSG00000056201 109.85 1141.28 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
76. H3f3b ENSMUSG00000016559 109.11 1133.59 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
77. Hbb-y ENSMUSG00000052187 105.67 1097.85 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
78. Ran ENSMUSG00000029430 105.67 1097.85 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
79. Pabpc1 ENSMUSG00000022283 103.21 1072.29 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
80. Stmn1 ENSMUSG00000028832 103.21 1072.29 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
81. Nasp ENSMUSG00000028693 102.47 1064.60 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
82. Gm14586 ENSMUSG00000083621 99.53 1034.06 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
83. Pcbp1 ENSMUSG00000051695 99.53 1034.06 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
84. Cd24a ENSMUSG00000047139 99.03 1028.86 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
85. Igfbp4 ENSMUSG00000017493 97.56 1013.59 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
86. Lamp1 ENSMUSG00000031447 96.82 1005.90 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
87. Hnrnpk ENSMUSG00000021546 96.33 1000.81 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
88. Rrm2 ENSMUSG00000020649 96.33 1000.81 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
89. Srsf3 ENSMUSG00000071172 94.61 982.94 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
90. Paics ENSMUSG00000029247 94.12 977.85 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
91. Tsc22d1 ENSMUSG00000022010 94.12 977.85 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
92. 2810417H13Rik 92.15 957.38 RIKEN cDNA 2810417H13 gene
93. Mrfap1 ENSMUSG00000055302 91.91 954.89 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
94. Sfpq ENSMUSG00000028820 90.92 944.60 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
95. Serpinh1 ENSMUSG00000070436 88.22 916.55 serine (or cysteine) peptidase inhibitor, clade H, member 1 [Source:MGI Symbol;Acc:MGI:88283]
96. Anp32b ENSMUSG00000028333 86.75 901.28 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
97. Gpc3 ENSMUSG00000055653 86.50 898.68 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
98. Marcks ENSMUSG00000069662 86.50 898.68 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
99. Rpl26 ENSMUSG00000060938 86.26 896.19 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
100. Scd2 ENSMUSG00000025203 86.26 896.19 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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