Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s33.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2320.33 24109.79 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2011.85 20904.48 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 1636.31 17002.37 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Nd4 ENSMUSG00000064363 1488.77 15469.32 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 1435.12 14911.87 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Rnr2 ENSMUSG00000064339 1372.53 14261.51 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
7. mt-Co1 ENSMUSG00000064351 1059.57 11009.65 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Co2 ENSMUSG00000064354 1059.57 11009.65 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. mt-Co3 ENSMUSG00000064358 907.57 9430.26 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. Eef1a1 ENSMUSG00000037742 836.04 8687.02 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. Actb ENSMUSG00000029580 719.80 7479.21 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Tubb5 ENSMUSG00000001525 706.38 7339.76 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
13. Hmga2 ENSMUSG00000056758 630.38 6550.07 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
14. Rpsa ENSMUSG00000032518 540.96 5620.94 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Mdk ENSMUSG00000027239 482.84 5017.03 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Nd2 ENSMUSG00000064345 424.72 4413.13 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Tuba1b ENSMUSG00000023004 420.25 4366.68 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
18. mt-Nd3 ENSMUSG00000064360 411.31 4273.79 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
19. Npm1 ENSMUSG00000057113 397.90 4134.45 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. mt-Nd5 ENSMUSG00000064367 384.49 3995.11 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. H19 ENSMUSG00000000031 380.02 3948.66 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
22. Rpl4 ENSMUSG00000032399 326.37 3391.20 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
23. Gm13340 ENSMUSG00000083563 299.54 3112.42 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
24. Hbb-y ENSMUSG00000052187 290.60 3019.53 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
25. Rpl23 ENSMUSG00000071415 290.60 3019.53 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
26. Chchd2 ENSMUSG00000070493 281.66 2926.64 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
27. Pkm ENSMUSG00000032294 254.83 2647.86 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Igf2 ENSMUSG00000048583 245.89 2554.96 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
29. Rpl18a ENSMUSG00000045128 245.89 2554.96 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
30. Eef1b2 ENSMUSG00000025967 236.95 2462.07 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
31. Rps4x ENSMUSG00000031320 228.01 2369.18 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
32. Set ENSMUSG00000054766 228.01 2369.18 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
33. Hsp90aa1 ENSMUSG00000021270 223.54 2322.73 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
34. Tpt1 ENSMUSG00000060126 223.54 2322.73 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Eif4g2 ENSMUSG00000005610 214.60 2229.84 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Ubb ENSMUSG00000019505 210.13 2183.39 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
37. Hsp90ab1 ENSMUSG00000023944 205.66 2136.95 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Hmgn1 ENSMUSG00000040681 183.30 1904.61 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
39. Rps3a1 ENSMUSG00000028081 169.89 1765.27 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
40. Rps9 ENSMUSG00000006333 169.89 1765.27 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
41. Eif5a ENSMUSG00000078812 165.42 1718.83 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 165.42 1718.83 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
43. Gm8292 ENSMUSG00000100215 160.95 1672.38 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
44. Peg3 ENSMUSG00000002265 160.95 1672.38 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
45. Ywhab ENSMUSG00000018326 156.48 1625.93 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
46. Ncl ENSMUSG00000026234 147.54 1533.04 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
47. Rplp1 ENSMUSG00000007892 143.06 1486.49 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
48. Rps26 ENSMUSG00000025362 143.06 1486.49 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. mt-Rnr1 ENSMUSG00000064337 143.06 1486.49 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
50. Anp32b ENSMUSG00000028333 138.59 1440.04 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
51. Cd24a ENSMUSG00000047139 138.59 1440.04 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
52. Ldha ENSMUSG00000063229 138.59 1440.04 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
53. Rps20 ENSMUSG00000028234 138.59 1440.04 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
54. Wbp5 138.59 1440.04 WW domain binding protein 5
55. Atp5g3 ENSMUSG00000018770 134.12 1393.60 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
56. Gm14586 ENSMUSG00000083621 134.12 1393.60 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
57. Grb10 ENSMUSG00000020176 134.12 1393.60 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
58. Gm5805 ENSMUSG00000061848 129.65 1347.15 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
59. Sfrp1 ENSMUSG00000031548 129.65 1347.15 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
60. Serbp1 ENSMUSG00000036371 125.18 1300.70 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
61. Eef2 ENSMUSG00000034994 120.71 1254.26 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
62. Gnb2l1 Gnb2l1 120.71 1254.26
63. Hba-x ENSMUSG00000055609 120.71 1254.26 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
64. Myl6 ENSMUSG00000090841 120.71 1254.26 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
65. Cox8a ENSMUSG00000035885 116.24 1207.81 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
66. Fkbp1a ENSMUSG00000032966 116.24 1207.81 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
67. Igfbp4 ENSMUSG00000017493 116.24 1207.81 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
68. Rpl8 ENSMUSG00000003970 116.24 1207.81 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
69. Trim28 ENSMUSG00000005566 116.24 1207.81 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
70. Tuba1a ENSMUSG00000072235 116.24 1207.81 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
71. Banf1 ENSMUSG00000024844 111.77 1161.37 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
72. Lamp1 ENSMUSG00000031447 111.77 1161.37 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
73. Pabpc1 ENSMUSG00000022283 111.77 1161.37 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
74. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 111.77 1161.37 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
75. Crabp1 ENSMUSG00000032291 107.30 1114.92 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
76. Hspe1 ENSMUSG00000073676 107.30 1114.92 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
77. Marcks ENSMUSG00000069662 107.30 1114.92 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
78. Meg3 ENSMUSG00000021268 107.30 1114.92 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
79. Rps5 ENSMUSG00000012848 107.30 1114.92 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
80. Ywhag ENSMUSG00000051391 107.30 1114.92 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
81. H3f3b ENSMUSG00000016559 102.83 1068.47 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
82. Hba-a1 ENSMUSG00000069919 102.83 1068.47 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
83. Nasp ENSMUSG00000028693 102.83 1068.47 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
84. Nedd4 ENSMUSG00000032216 102.83 1068.47 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
85. Rpl37 ENSMUSG00000041841 102.83 1068.47 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
86. Ybx1 ENSMUSG00000028639 102.83 1068.47 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
87. Ddx5 ENSMUSG00000020719 98.36 1022.03 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
88. Pcbp1 ENSMUSG00000051695 98.36 1022.03 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
89. Rbm25 ENSMUSG00000010608 98.36 1022.03 RNA binding motif protein 25 [Source:MGI Symbol;Acc:MGI:1914289]
90. Rpl32 ENSMUSG00000057841 98.36 1022.03 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
91. Son ENSMUSG00000022961 98.36 1022.03 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
92. Srsf3 ENSMUSG00000071172 98.36 1022.03 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
93. Sub1 ENSMUSG00000022205 98.36 1022.03 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
94. Btf3 ENSMUSG00000021660 93.89 975.58 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
95. Cfl1 ENSMUSG00000056201 93.89 975.58 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
96. Eef1g ENSMUSG00000071644 93.89 975.58 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
97. Eif4b ENSMUSG00000058655 93.89 975.58 eukaryotic translation initiation factor 4B [Source:MGI Symbol;Acc:MGI:95304]
98. Hnrnpa1 ENSMUSG00000046434 93.89 975.58 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
99. Mapre1 ENSMUSG00000027479 93.89 975.58 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
100. Ngfrap1 93.89 975.58 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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