Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s32.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2225.57 23122.84 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2102.77 21846.99 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 1521.69 15809.79 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Nd1 ENSMUSG00000064341 1390.41 14445.84 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Atp6 ENSMUSG00000064357 1330.49 13823.29 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Co1 ENSMUSG00000064351 958.94 9963.03 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
7. Eef1a1 ENSMUSG00000037742 883.25 9176.64 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
8. mt-Co2 ENSMUSG00000064354 837.13 8697.47 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. mt-Rnr2 ENSMUSG00000064339 771.09 8011.34 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. mt-Co3 ENSMUSG00000064358 704.67 7321.26 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Actb ENSMUSG00000029580 690.28 7171.75 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Hbb-y ENSMUSG00000052187 597.83 6211.23 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
13. Tubb5 ENSMUSG00000001525 526.68 5472.01 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
14. Hmga2 ENSMUSG00000056758 525.10 5455.59 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
15. H19 ENSMUSG00000000031 488.83 5078.76 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. mt-Nd3 ENSMUSG00000064360 486.86 5058.29 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
17. Rpsa ENSMUSG00000032518 466.76 4849.46 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. Mdk ENSMUSG00000027239 410.78 4267.85 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Tuba1b ENSMUSG00000023004 369.58 3839.80 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. mt-Nd2 ENSMUSG00000064345 314.78 3270.45 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
21. Rpl23 ENSMUSG00000071415 309.27 3213.20 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
22. Set ENSMUSG00000054766 308.67 3206.97 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
23. Igf2 ENSMUSG00000048583 285.02 2961.25 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
24. Npm1 ENSMUSG00000057113 284.82 2959.17 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Pkm ENSMUSG00000032294 263.93 2742.13 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Gm13340 ENSMUSG00000083563 256.64 2666.39 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
27. Chchd2 ENSMUSG00000070493 253.68 2635.64 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
28. mt-Nd5 ENSMUSG00000064367 249.54 2592.63 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
29. Hmgn1 ENSMUSG00000040681 242.64 2520.94 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
30. Ubb ENSMUSG00000019505 216.43 2248.63 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Rpl18a ENSMUSG00000045128 215.64 2240.42 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
32. Hsp90ab1 ENSMUSG00000023944 214.26 2226.08 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Rpl4 ENSMUSG00000032399 209.72 2178.91 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Tpt1 ENSMUSG00000060126 205.19 2131.85 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Eif4g2 ENSMUSG00000005610 204.99 2129.77 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Rps4x ENSMUSG00000031320 203.42 2113.46 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
37. Itga6 ENSMUSG00000027111 194.55 2021.30 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
38. Hba-a1 ENSMUSG00000069919 193.36 2008.94 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
39. Eef1b2 ENSMUSG00000025967 190.41 1978.29 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
40. Eef2 ENSMUSG00000034994 182.72 1898.39 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
41. Hba-x ENSMUSG00000055609 182.72 1898.39 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
42. Hsp90aa1 ENSMUSG00000021270 168.13 1746.81 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
43. Rplp1 ENSMUSG00000007892 163.21 1695.69 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
44. Rps5 ENSMUSG00000012848 155.13 1611.74 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
45. Myl6 ENSMUSG00000090841 150.20 1560.52 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
46. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 143.89 1494.96 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
47. Rps3a1 ENSMUSG00000028081 142.71 1482.70 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
48. Rps9 ENSMUSG00000006333 142.51 1480.63 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
49. Rps20 ENSMUSG00000028234 142.12 1476.57 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
50. Eif5a ENSMUSG00000078812 140.74 1462.24 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
51. Ywhab ENSMUSG00000018326 139.95 1454.03 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
52. Son ENSMUSG00000022961 139.75 1451.95 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
53. Ncl ENSMUSG00000026234 128.12 1331.12 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
54. Peg3 ENSMUSG00000002265 128.12 1331.12 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
55. Gm5805 ENSMUSG00000061848 126.94 1318.86 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
56. Rpl8 ENSMUSG00000003970 126.54 1314.70 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
57. Atp5g3 ENSMUSG00000018770 125.76 1306.60 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
58. Nedd4 ENSMUSG00000032216 125.76 1306.60 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
59. Rps26 ENSMUSG00000025362 125.16 1300.37 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
60. Serbp1 ENSMUSG00000036371 124.77 1296.31 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
61. Ddx5 ENSMUSG00000020719 124.38 1292.26 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
62. Fkbp1a ENSMUSG00000032966 123.98 1288.11 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
63. Wbp5 122.41 1271.79 WW domain binding protein 5
64. Eef1g ENSMUSG00000071644 120.24 1249.25 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
65. Hbb-bh1 ENSMUSG00000052217 120.24 1249.25 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
66. Tuba1a ENSMUSG00000072235 120.04 1247.17 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
67. Pbx1 ENSMUSG00000052534 118.86 1234.91 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
68. Rpl37 ENSMUSG00000041841 117.28 1218.50 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
69. Ybx1 ENSMUSG00000028639 116.69 1212.37 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
70. Cdk4 ENSMUSG00000006728 116.49 1210.29 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
71. Lamp1 ENSMUSG00000031447 114.52 1189.82 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
72. Trim28 ENSMUSG00000005566 113.93 1183.69 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
73. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 111.37 1157.09 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
74. Ngfrap1 111.17 1155.01 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
75. Tsc22d1 ENSMUSG00000022010 111.17 1155.01 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
76. Tmsb4x ENSMUSG00000049775 109.59 1138.60 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
77. Meg3 ENSMUSG00000021268 105.85 1099.74 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
78. Grb10 ENSMUSG00000020176 105.26 1093.61 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
79. Pabpc1 ENSMUSG00000022283 105.26 1093.61 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
80. Gm8292 ENSMUSG00000100215 103.29 1073.14 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
81. Hnrnpc ENSMUSG00000060373 103.09 1071.07 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
82. Rpl41 ENSMUSG00000093674 101.91 1058.81 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
83. Erh ENSMUSG00000021131 100.33 1042.39 ERH mRNA splicing and mitosis factor [Source:MGI Symbol;Acc:MGI:108089]
84. H3f3b ENSMUSG00000016559 99.54 1034.18 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
85. Sfrp1 ENSMUSG00000031548 98.75 1025.98 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
86. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 97.96 1017.77 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
87. Stmn1 ENSMUSG00000028832 97.57 1013.72 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
88. Gpc3 ENSMUSG00000055653 94.02 976.83 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
89. Cfl1 ENSMUSG00000056201 92.84 964.57 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
90. Pcbp1 ENSMUSG00000051695 92.25 958.44 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
91. Gm14586 ENSMUSG00000083621 91.66 952.31 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
92. Sparc ENSMUSG00000018593 91.66 952.31 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
93. Mrfap1 ENSMUSG00000055302 91.26 948.16 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
94. Btf3 ENSMUSG00000021660 90.47 939.95 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
95. Prdx1 ENSMUSG00000028691 89.88 933.82 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
96. Crabp1 ENSMUSG00000032291 88.90 923.64 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
97. Gm5963 ENSMUSG00000052192 88.90 923.64 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
98. Cdkn1c ENSMUSG00000037664 88.11 915.43 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
99. Gnb2l1 Gnb2l1 88.11 915.43
100. Rpl32 ENSMUSG00000057841 87.91 913.35 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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