Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s31.

Sample reads: 96,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2092.22 21738.37 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 1905.27 19795.94 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 1587.59 16495.21 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1552.11 16126.57 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1310.30 13614.14 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 861.62 8952.31 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 855.34 8887.06 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 808.40 8399.35 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Co3 ENSMUSG00000064358 767.19 7971.18 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. Eef1a1 ENSMUSG00000037742 749.99 7792.47 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. Actb ENSMUSG00000029580 710.96 7386.94 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. H19 ENSMUSG00000000031 527.29 5478.59 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Tubb5 ENSMUSG00000001525 517.73 5379.26 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
14. Hmga2 ENSMUSG00000056758 502.45 5220.50 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
15. Hbb-y ENSMUSG00000052187 501.90 5214.79 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. mt-Nd3 ENSMUSG00000064360 464.51 4826.30 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
17. Rpsa ENSMUSG00000032518 446.77 4641.98 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. Tuba1b ENSMUSG00000023004 416.75 4330.07 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
19. Igf2 ENSMUSG00000048583 402.83 4185.44 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
20. Mdk ENSMUSG00000027239 394.65 4100.45 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. mt-Nd2 ENSMUSG00000064345 341.15 3544.58 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
22. mt-Nd5 ENSMUSG00000064367 315.23 3275.27 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Rpl4 ENSMUSG00000032399 306.76 3187.27 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
24. Npm1 ENSMUSG00000057113 302.40 3141.97 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Pkm ENSMUSG00000032294 286.02 2971.78 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Set ENSMUSG00000054766 271.83 2824.34 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
27. Rpl23 ENSMUSG00000071415 271.28 2818.63 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
28. Ubb ENSMUSG00000019505 252.18 2620.17 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Hmgn1 ENSMUSG00000040681 247.27 2569.16 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
30. Chchd2 ENSMUSG00000070493 246.45 2560.64 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Tpt1 ENSMUSG00000060126 229.53 2384.84 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Gm13340 ENSMUSG00000083563 221.89 2305.46 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
33. Hsp90ab1 ENSMUSG00000023944 208.51 2166.44 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Eef1b2 ENSMUSG00000025967 201.14 2089.86 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
35. Rps4x ENSMUSG00000031320 198.96 2067.21 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
36. Eif4g2 ENSMUSG00000005610 194.32 2019.00 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Rpl18a ENSMUSG00000045128 185.59 1928.30 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
38. Eef2 ENSMUSG00000034994 156.38 1624.80 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
39. Rps20 ENSMUSG00000028234 155.84 1619.19 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Hsp90aa1 ENSMUSG00000021270 148.47 1542.62 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Hba-a1 ENSMUSG00000069919 146.56 1522.77 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
42. Peg3 ENSMUSG00000002265 144.10 1497.21 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
43. Rpl41 ENSMUSG00000093674 141.65 1471.76 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
44. Rps5 ENSMUSG00000012848 141.10 1466.04 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
45. Fkbp1a ENSMUSG00000032966 139.19 1446.20 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
46. Ywhab ENSMUSG00000018326 138.37 1437.68 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
47. Rps9 ENSMUSG00000006333 137.83 1432.07 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
48. Rps26 ENSMUSG00000025362 137.28 1426.35 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. Son ENSMUSG00000022961 136.46 1417.83 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
50. Hba-x ENSMUSG00000055609 135.92 1412.22 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
51. Atp5g3 ENSMUSG00000018770 135.37 1406.51 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
52. Myl6 ENSMUSG00000090841 135.10 1403.70 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
53. Ybx1 ENSMUSG00000028639 134.82 1400.79 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
54. Nedd4 ENSMUSG00000032216 133.19 1383.86 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
55. Eif5a ENSMUSG00000078812 132.37 1375.34 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
56. Tuba1a ENSMUSG00000072235 132.37 1375.34 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
57. Rplp1 ENSMUSG00000007892 131.55 1366.82 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
58. Sparc ENSMUSG00000018593 130.18 1352.58 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
59. Gm8292 ENSMUSG00000100215 129.37 1344.17 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
60. Itga6 ENSMUSG00000027111 128.00 1329.93 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
61. Ncl ENSMUSG00000026234 125.27 1301.57 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
62. Wbp5 124.18 1290.24 WW domain binding protein 5
63. Serbp1 ENSMUSG00000036371 123.91 1287.44 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
64. Rps3a1 ENSMUSG00000028081 122.82 1276.11 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
65. Tmsb4x ENSMUSG00000049775 122.27 1270.40 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
66. Tsc22d1 ENSMUSG00000022010 122.27 1270.40 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
67. Rpl8 ENSMUSG00000003970 119.54 1242.03 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
68. Meg3 ENSMUSG00000021268 118.45 1230.71 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
69. Trim28 ENSMUSG00000005566 117.90 1224.99 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
70. Cdk4 ENSMUSG00000006728 117.08 1216.47 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
71. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 114.90 1193.82 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
72. Eef1g ENSMUSG00000071644 114.08 1185.30 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
73. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 113.81 1182.50 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
74. Hbb-bh1 ENSMUSG00000052217 113.54 1179.69 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
75. Crabp1 ENSMUSG00000032291 112.99 1173.98 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
76. Ddx5 ENSMUSG00000020719 112.44 1168.26 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
77. Pcbp1 ENSMUSG00000051695 111.63 1159.85 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
78. Hnrnpc ENSMUSG00000060373 109.44 1137.09 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
79. Igfbp4 ENSMUSG00000017493 109.44 1137.09 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
80. Lamp1 ENSMUSG00000031447 109.44 1137.09 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
81. Sfrp1 ENSMUSG00000031548 106.99 1111.64 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
82. Grb10 ENSMUSG00000020176 106.71 1108.73 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
83. Cfl1 ENSMUSG00000056201 106.17 1103.12 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
84. Pabpc1 ENSMUSG00000022283 105.35 1094.60 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
85. Ran ENSMUSG00000029430 104.53 1086.08 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
86. Ngfrap1 102.07 1060.52 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
87. Nasp ENSMUSG00000028693 101.53 1054.91 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
88. Stmn1 ENSMUSG00000028832 100.98 1049.19 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
89. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 100.71 1046.39 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
90. Pbx1 ENSMUSG00000052534 95.52 992.46 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
91. Rpl32 ENSMUSG00000057841 93.89 975.53 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
92. Gm5805 ENSMUSG00000061848 93.07 967.01 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
93. Gnb2l1 Gnb2l1 92.79 964.10
94. H3f3b ENSMUSG00000016559 92.79 964.10 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
95. Anp32b ENSMUSG00000028333 92.52 961.29 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
96. Mrfap1 ENSMUSG00000055302 91.97 955.58 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
97. Gm14586 ENSMUSG00000083621 91.70 952.77 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
98. Tpm4 ENSMUSG00000031799 89.25 927.32 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
99. Paics ENSMUSG00000029247 88.97 924.41 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
100. Hnrnpk ENSMUSG00000021546 87.34 907.47 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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