Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s30.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2575.42 26757.64 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2227.55 23143.40 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2219.19 23056.54 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd1 ENSMUSG00000064341 1839.63 19113.06 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1624.09 16873.68 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co1 ENSMUSG00000064351 1026.89 10669.00 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
7. mt-Rnr2 ENSMUSG00000064339 1014.36 10538.82 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co2 ENSMUSG00000064354 1008.44 10477.31 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. mt-Co3 ENSMUSG00000064358 851.74 8849.26 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. Eef1a1 ENSMUSG00000037742 825.62 8577.88 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. Hbb-y ENSMUSG00000052187 755.63 7850.71 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
12. Actb ENSMUSG00000029580 630.27 6548.27 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Hmga2 ENSMUSG00000056758 629.58 6541.10 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
14. H19 ENSMUSG00000000031 614.26 6381.93 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. mt-Nd3 ENSMUSG00000064360 580.48 6030.97 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. Rpsa ENSMUSG00000032518 568.99 5911.59 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
17. Mdk ENSMUSG00000027239 463.83 4819.02 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. mt-Nd2 ENSMUSG00000064345 404.28 4200.32 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
19. Tubb5 ENSMUSG00000001525 388.61 4037.51 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
20. Npm1 ENSMUSG00000057113 386.17 4012.16 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Igf2 ENSMUSG00000048583 365.63 3798.76 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. mt-Nd5 ENSMUSG00000064367 364.93 3791.48 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Set ENSMUSG00000054766 340.21 3534.65 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
24. Rpl23 ENSMUSG00000071415 326.63 3393.56 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
25. Tuba1b ENSMUSG00000023004 306.78 3187.33 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Tpt1 ENSMUSG00000060126 258.03 2680.83 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. Gm13340 ENSMUSG00000083563 252.11 2619.33 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
28. Rpl4 ENSMUSG00000032399 238.53 2478.24 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
29. Rps4x ENSMUSG00000031320 231.56 2405.82 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
30. Chchd2 ENSMUSG00000070493 226.69 2355.22 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Hmgn1 ENSMUSG00000040681 218.68 2272.00 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
32. Rpl18a ENSMUSG00000045128 215.89 2243.02 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
33. Eef1b2 ENSMUSG00000025967 202.66 2105.56 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
34. Ubb ENSMUSG00000019505 197.09 2047.69 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Eif4g2 ENSMUSG00000005610 191.17 1986.18 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Hsp90ab1 ENSMUSG00000023944 186.64 1939.12 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Tmsb4x ENSMUSG00000049775 184.21 1913.87 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
38. Hba-a1 ENSMUSG00000069919 183.51 1906.60 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
39. Hbb-bh1 ENSMUSG00000052217 180.03 1870.44 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
40. Hsp90aa1 ENSMUSG00000021270 179.68 1866.81 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Pkm ENSMUSG00000032294 174.81 1816.21 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
42. Hba-x ENSMUSG00000055609 173.76 1805.30 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
43. Rplp1 ENSMUSG00000007892 162.27 1685.92 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
44. Rps20 ENSMUSG00000028234 157.05 1631.69 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. Rps3a1 ENSMUSG00000028081 156.00 1620.78 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
46. Ywhab ENSMUSG00000018326 154.26 1602.70 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
47. Rps9 ENSMUSG00000006333 153.91 1599.07 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
48. Ncl ENSMUSG00000026234 148.69 1544.83 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
49. Peg3 ENSMUSG00000002265 145.55 1512.21 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
50. Serbp1 ENSMUSG00000036371 145.21 1508.68 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
51. Myl6 ENSMUSG00000090841 144.51 1501.40 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
52. Rps26 ENSMUSG00000025362 141.03 1465.25 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
53. Gm5805 ENSMUSG00000061848 140.33 1457.98 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
54. mt-Rnr1 ENSMUSG00000064337 139.64 1450.81 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
55. Pbx1 ENSMUSG00000052534 139.29 1447.17 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
56. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 138.59 1439.90 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
57. Eef2 ENSMUSG00000034994 136.50 1418.18 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
58. Gm8292 ENSMUSG00000100215 136.50 1418.18 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
59. Fkbp1a ENSMUSG00000032966 133.72 1389.30 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
60. Eif5a ENSMUSG00000078812 132.32 1374.75 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
61. Rps5 ENSMUSG00000012848 131.28 1363.95 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
62. Son ENSMUSG00000022961 130.23 1353.04 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
63. Hnrnpc ENSMUSG00000060373 123.27 1280.73 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
64. Atp5g3 ENSMUSG00000018770 122.22 1269.82 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
65. Pabpc1 ENSMUSG00000022283 121.88 1266.29 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Rpl8 ENSMUSG00000003970 118.05 1226.49 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
67. Ybx1 ENSMUSG00000028639 118.05 1226.49 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
68. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 116.65 1211.95 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
69. Gm14586 ENSMUSG00000083621 115.26 1197.51 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
70. Nedd4 ENSMUSG00000032216 115.26 1197.51 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
71. Wbp5 113.87 1183.07 WW domain binding protein 5
72. Grb10 ENSMUSG00000020176 112.82 1172.16 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
73. Itga6 ENSMUSG00000027111 112.13 1164.99 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
74. Prdx1 ENSMUSG00000028691 111.43 1157.72 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
75. Tsc22d1 ENSMUSG00000022010 108.30 1125.20 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
76. Ddx5 ENSMUSG00000020719 107.95 1121.56 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
77. Eef1g ENSMUSG00000071644 105.51 1096.21 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
78. Tuba1a ENSMUSG00000072235 103.07 1070.86 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
79. Stmn1 ENSMUSG00000028832 102.72 1067.22 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
80. Lamp1 ENSMUSG00000031447 102.03 1060.05 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
81. H3f3b ENSMUSG00000016559 100.63 1045.51 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
82. Cdk4 ENSMUSG00000006728 98.89 1027.43 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
83. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 98.20 1020.26 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
84. Rpl36a ENSMUSG00000079435 97.15 1009.35 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
85. Srsf3 ENSMUSG00000071172 97.15 1009.35 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
86. Hnrnpk ENSMUSG00000021546 96.11 998.55 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
87. Rpl26 ENSMUSG00000060938 95.06 987.64 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
88. Rrm2 ENSMUSG00000020649 95.06 987.64 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
89. Ran ENSMUSG00000029430 94.37 980.47 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
90. Pcbp1 ENSMUSG00000051695 93.32 969.56 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
91. Mrfap1 ENSMUSG00000055302 91.58 951.48 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
92. Ngfrap1 90.54 940.68 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
93. Meg3 ENSMUSG00000021268 90.19 937.04 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
94. Rpl32 ENSMUSG00000057841 89.84 933.40 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
95. Trim28 ENSMUSG00000005566 89.84 933.40 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
96. Nasp ENSMUSG00000028693 87.75 911.69 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
97. Gnb2l1 Gnb2l1 86.36 897.25
98. Mapre1 ENSMUSG00000027479 86.01 893.61 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
99. Cfl1 ENSMUSG00000056201 85.66 889.97 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
100. Marcks ENSMUSG00000069662 85.66 889.97 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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