Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s3.

Sample reads: 96,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2690.04 27950.40 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. Hbb-y ENSMUSG00000052187 1153.19 11982.02 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
3. mt-Cytb ENSMUSG00000064370 1115.22 11587.50 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Rnr2 ENSMUSG00000064339 1036.40 10768.54 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
5. mt-Nd1 ENSMUSG00000064341 979.23 10174.52 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 971.68 10096.07 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. Eef1a1 ENSMUSG00000037742 770.77 8008.55 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
8. mt-Nd4 ENSMUSG00000064363 714.62 7425.14 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
9. mt-Co1 ENSMUSG00000064351 700.94 7283.00 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Co2 ENSMUSG00000064354 667.86 6939.28 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
11. Rpsa ENSMUSG00000032518 655.20 6807.74 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
12. Actb ENSMUSG00000029580 592.32 6154.40 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Tubb5 ENSMUSG00000001525 545.15 5664.29 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
14. Tuba1b ENSMUSG00000023004 428.57 4452.98 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
15. mt-Co3 ENSMUSG00000064358 403.66 4194.16 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Tuba1a ENSMUSG00000072235 388.75 4039.24 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
17. Hba-a1 ENSMUSG00000069919 362.21 3763.48 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
18. Npm1 ENSMUSG00000057113 362.21 3763.48 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
19. Set ENSMUSG00000054766 357.11 3710.49 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
20. Rpl18a ENSMUSG00000045128 349.35 3629.86 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
21. Hba-x ENSMUSG00000055609 345.26 3587.36 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
22. Mdk ENSMUSG00000027239 321.58 3341.32 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. Rpl23 ENSMUSG00000071415 301.57 3133.41 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
24. Hbb-bh1 ENSMUSG00000052217 286.46 2976.41 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
25. Rpl4 ENSMUSG00000032399 286.05 2972.15 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
26. Tubb2b ENSMUSG00000045136 267.27 2777.02 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
27. Rps4x ENSMUSG00000031320 257.47 2675.20 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
28. Hsp90ab1 ENSMUSG00000023944 251.75 2615.77 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Rplp1 ENSMUSG00000007892 246.24 2558.51 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
30. mt-Nd5 ENSMUSG00000064367 244.40 2539.40 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
31. mt-Nd2 ENSMUSG00000064345 240.93 2503.34 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
32. Hmgn1 ENSMUSG00000040681 238.48 2477.89 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
33. Eif4g2 ENSMUSG00000005610 235.21 2443.91 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Pkm ENSMUSG00000032294 233.78 2429.05 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Chchd2 ENSMUSG00000070493 230.11 2390.92 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
36. Tmsb4x ENSMUSG00000049775 226.23 2350.60 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
37. Ubb ENSMUSG00000019505 222.96 2316.63 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
38. Hsp90aa1 ENSMUSG00000021270 219.49 2280.57 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
39. mt-Nd3 ENSMUSG00000064360 217.65 2261.45 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
40. Tpt1 ENSMUSG00000060126 216.84 2253.04 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
41. Crabp1 ENSMUSG00000032291 214.18 2225.40 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
42. mt-Rnr1 ENSMUSG00000064337 201.93 2098.12 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
43. Eef1b2 ENSMUSG00000025967 201.32 2091.78 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Eif5a ENSMUSG00000078812 193.15 2006.89 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
45. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 189.88 1972.92 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
46. Rps20 ENSMUSG00000028234 176.41 1832.96 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
47. Gm13340 ENSMUSG00000083563 176.21 1830.88 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
48. Serbp1 ENSMUSG00000036371 174.78 1816.02 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
49. Eef2 ENSMUSG00000034994 171.51 1782.05 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
50. Rps9 ENSMUSG00000006333 170.90 1775.71 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
51. Ybx1 ENSMUSG00000028639 170.90 1775.71 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
52. Ccnd2 ENSMUSG00000000184 167.43 1739.65 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
53. Atp5g3 ENSMUSG00000018770 165.79 1722.61 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
54. Ncl ENSMUSG00000026234 165.79 1722.61 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
55. Rrm2 ENSMUSG00000020649 162.73 1690.82 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
56. Hba-a2 ENSMUSG00000069917 162.32 1686.56 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
57. Fkbp1a ENSMUSG00000032966 161.71 1680.22 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
58. Hnrnpc ENSMUSG00000060373 157.62 1637.72 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
59. Rps26 ENSMUSG00000025362 157.22 1633.57 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
60. Ran ENSMUSG00000029430 155.99 1620.79 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
61. Rpl8 ENSMUSG00000003970 153.75 1597.51 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
62. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 151.09 1569.87 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
63. Rps3a1 ENSMUSG00000028081 147.21 1529.56 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
64. H19 ENSMUSG00000000031 142.72 1482.91 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
65. Rps5 ENSMUSG00000012848 141.49 1470.13 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
66. Gm8292 ENSMUSG00000100215 136.39 1417.14 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
67. Nedd4 ENSMUSG00000032216 136.39 1417.14 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
68. Hmga2 ENSMUSG00000056758 132.72 1379.00 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
69. Ldha ENSMUSG00000063229 131.08 1361.96 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
70. Stmn1 ENSMUSG00000028832 130.06 1351.37 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
71. Gm5805 ENSMUSG00000061848 129.04 1340.77 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
72. Cfl1 ENSMUSG00000056201 127.20 1321.65 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
73. Pcbp1 ENSMUSG00000051695 123.32 1281.34 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
74. Trim28 ENSMUSG00000005566 121.69 1264.40 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
75. Banf1 ENSMUSG00000024844 120.67 1253.80 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
76. Ywhab ENSMUSG00000018326 119.65 1243.20 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
77. Son ENSMUSG00000022961 118.42 1230.42 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
78. Ddx5 ENSMUSG00000020719 117.20 1217.75 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
79. Eef1g ENSMUSG00000071644 116.59 1211.41 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
80. Pabpc1 ENSMUSG00000022283 116.38 1209.23 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
81. Btf3 ENSMUSG00000021660 114.34 1188.03 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
82. Ckb ENSMUSG00000001270 113.73 1181.69 creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
83. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 112.50 1168.91 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
84. Paics ENSMUSG00000029247 109.44 1137.12 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
85. Hnrnpk ENSMUSG00000021546 107.60 1118.00 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
86. Srsf3 ENSMUSG00000071172 106.58 1107.40 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
87. Map1b ENSMUSG00000052727 103.11 1071.35 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
88. Cdk4 ENSMUSG00000006728 102.29 1062.83 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
89. Mrfap1 ENSMUSG00000055302 101.88 1058.57 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
90. Rpl32 ENSMUSG00000057841 101.27 1052.23 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
91. Anp32b ENSMUSG00000028333 100.05 1039.55 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
92. Calm1 ENSMUSG00000001175 100.05 1039.55 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
93. Gm14586 ENSMUSG00000083621 99.84 1037.37 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
94. Myl6 ENSMUSG00000090841 99.84 1037.37 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
95. Grb10 ENSMUSG00000020176 99.43 1033.11 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
96. Gm5963 ENSMUSG00000052192 99.03 1028.95 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
97. Nasp ENSMUSG00000028693 98.62 1024.69 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
98. Prdx1 ENSMUSG00000028691 98.62 1024.69 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
99. Ywhae ENSMUSG00000020849 98.01 1018.36 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
100. Fkbp4 ENSMUSG00000030357 97.80 1016.17 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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