Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s29.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 3102.78 32239.39 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 2497.42 25949.41 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Cytb ENSMUSG00000064370 1687.30 17531.87 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd1 ENSMUSG00000064341 1508.47 15673.74 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1429.78 14856.11 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Atp6 ENSMUSG00000064357 1427.10 14828.26 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. Hmga2 ENSMUSG00000056758 824.43 8566.23 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
8. Eef1a1 ENSMUSG00000037742 757.36 7869.34 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
9. mt-Co2 ENSMUSG00000064354 756.47 7860.09 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
10. mt-Co1 ENSMUSG00000064351 731.43 7599.91 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Co3 ENSMUSG00000064358 670.63 6968.17 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Actb ENSMUSG00000029580 625.03 6494.37 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 595.52 6187.74 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Mdk ENSMUSG00000027239 546.34 5676.74 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Rpsa ENSMUSG00000032518 498.95 5184.33 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Hbb-y ENSMUSG00000052187 459.60 4775.47 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. Npm1 ENSMUSG00000057113 422.94 4394.55 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
18. Tuba1b ENSMUSG00000023004 401.48 4171.57 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
19. Tubb5 ENSMUSG00000001525 390.75 4060.08 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
20. mt-Nd5 ENSMUSG00000064367 382.71 3976.54 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. H19 ENSMUSG00000000031 354.09 3679.17 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
22. Igf2 ENSMUSG00000048583 346.94 3604.88 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
23. mt-Nd2 ENSMUSG00000064345 305.81 3177.51 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
24. Set ENSMUSG00000054766 298.65 3103.12 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
25. Rpl23 ENSMUSG00000071415 270.93 2815.09 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
26. Chchd2 ENSMUSG00000070493 266.46 2768.65 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
27. Tpt1 ENSMUSG00000060126 266.46 2768.65 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Ubb ENSMUSG00000019505 263.78 2740.80 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Gm13340 ENSMUSG00000083563 247.69 2573.62 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
30. Rpl4 ENSMUSG00000032399 237.85 2471.38 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Hmgn1 ENSMUSG00000040681 232.48 2415.58 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
32. Hsp90aa1 ENSMUSG00000021270 223.54 2322.69 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
33. Eif4g2 ENSMUSG00000005610 219.07 2276.24 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Rps4x ENSMUSG00000031320 203.87 2118.31 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
35. Eef1b2 ENSMUSG00000025967 199.40 2071.86 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
36. Hsp90ab1 ENSMUSG00000023944 182.41 1895.33 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Hba-x ENSMUSG00000055609 178.83 1858.13 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
38. mt-Rnr1 ENSMUSG00000064337 171.68 1783.84 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
39. Hbb-bh1 ENSMUSG00000052217 169.00 1755.99 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
40. Wbp5 168.10 1746.64 WW domain binding protein 5
41. Atp5g3 ENSMUSG00000018770 167.21 1737.39 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
42. Gm8292 ENSMUSG00000100215 167.21 1737.39 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
43. Pbx1 ENSMUSG00000052534 167.21 1737.39 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
44. Rps20 ENSMUSG00000028234 167.21 1737.39 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. Rpl18a ENSMUSG00000045128 166.32 1728.15 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
46. Eif5a ENSMUSG00000078812 157.37 1635.15 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Pkm ENSMUSG00000032294 156.48 1625.90 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
48. Rplp1 ENSMUSG00000007892 156.48 1625.90 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
49. Ybx1 ENSMUSG00000028639 155.59 1616.66 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
50. Rps26 ENSMUSG00000025362 150.22 1560.86 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Peg3 ENSMUSG00000002265 147.54 1533.01 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
52. Hba-a1 ENSMUSG00000069919 146.64 1523.66 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
53. Serbp1 ENSMUSG00000036371 143.96 1495.81 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
54. Pcbp1 ENSMUSG00000051695 142.17 1477.22 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
55. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 141.28 1467.97 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
56. Rps5 ENSMUSG00000012848 138.60 1440.12 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
57. Son ENSMUSG00000022961 135.91 1412.17 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
58. Nedd4 ENSMUSG00000032216 134.13 1393.68 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
59. Rps3a1 ENSMUSG00000028081 132.34 1375.08 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
60. Meg3 ENSMUSG00000021268 130.55 1356.48 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
61. Pabpc1 ENSMUSG00000022283 127.87 1328.63 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Ncl ENSMUSG00000026234 126.08 1310.03 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
63. Fkbp1a ENSMUSG00000032966 123.40 1282.19 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
64. Crabp1 ENSMUSG00000032291 122.50 1272.83 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
65. Rpl8 ENSMUSG00000003970 121.61 1263.59 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
66. Gm5805 ENSMUSG00000061848 120.71 1254.24 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
67. Rrm2 ENSMUSG00000020649 120.71 1254.24 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
68. Tmsb4x ENSMUSG00000049775 119.82 1244.99 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
69. Ywhab ENSMUSG00000018326 119.82 1244.99 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
70. Hspe1 ENSMUSG00000073676 118.03 1226.39 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
71. Hnrnpc ENSMUSG00000060373 117.14 1217.14 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
72. Rps9 ENSMUSG00000006333 117.14 1217.14 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
73. Eef1g ENSMUSG00000071644 115.35 1198.54 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
74. Ran ENSMUSG00000029430 114.45 1189.19 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
75. Btf3 ENSMUSG00000021660 112.67 1170.70 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
76. Eef2 ENSMUSG00000034994 112.67 1170.70 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
77. Srsf3 ENSMUSG00000071172 111.77 1161.34 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
78. Ddx5 ENSMUSG00000020719 110.88 1152.10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
79. Hnrnpk ENSMUSG00000021546 110.88 1152.10 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
80. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 109.98 1142.75 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
81. Cdk4 ENSMUSG00000006728 109.09 1133.50 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
82. Tuba1a ENSMUSG00000072235 109.09 1133.50 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
83. H3f3b ENSMUSG00000016559 108.19 1124.15 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
84. Rpl32 ENSMUSG00000057841 107.30 1114.90 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
85. Nasp ENSMUSG00000028693 105.51 1096.30 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
86. Hnrnpa0 ENSMUSG00000007836 104.62 1087.05 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
87. Tmpo ENSMUSG00000019961 104.62 1087.05 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
88. Ddx3x ENSMUSG00000000787 103.72 1077.70 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
89. Stmn1 ENSMUSG00000028832 103.72 1077.70 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
90. Marcks ENSMUSG00000069662 102.83 1068.45 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
91. Gnb2l1 Gnb2l1 101.94 1059.21
92. Flrt3 ENSMUSG00000051379 98.36 1022.01 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
93. Grb10 ENSMUSG00000020176 98.36 1022.01 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
94. 2810417H13Rik 97.46 1012.66 RIKEN cDNA 2810417H13 gene
95. Ngfrap1 97.46 1012.66 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
96. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 95.68 994.16 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
97. Cd24a ENSMUSG00000047139 94.78 984.81 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
98. Trim28 ENSMUSG00000005566 93.89 975.56 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
99. Gm10076 ENSMUSG00000060143 91.21 947.72 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
100. Sfrp1 ENSMUSG00000031548 91.21 947.72 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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