Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s28.

Sample reads: 96,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2336.23 24275.46 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 1801.34 18717.48 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 1366.41 14198.18 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 1347.52 14001.90 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd1 ENSMUSG00000064341 1221.43 12691.72 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Rnr2 ENSMUSG00000064339 982.02 10204.04 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
7. mt-Co1 ENSMUSG00000064351 861.74 8954.23 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Co2 ENSMUSG00000064354 783.87 8145.09 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. Actb ENSMUSG00000029580 754.24 7837.21 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. Eef1a1 ENSMUSG00000037742 726.64 7550.42 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. H19 ENSMUSG00000000031 702.52 7299.79 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. mt-Co3 ENSMUSG00000064358 687.42 7142.89 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Hbb-y ENSMUSG00000052187 676.67 7031.19 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
14. Tubb5 ENSMUSG00000001525 543.31 5645.46 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
15. Rpsa ENSMUSG00000032518 497.11 5165.40 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Hmga2 ENSMUSG00000056758 489.56 5086.95 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. Mdk ENSMUSG00000027239 432.90 4498.21 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Igf2 ENSMUSG00000048583 423.03 4395.65 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. mt-Nd3 ENSMUSG00000064360 414.02 4302.03 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
20. Tuba1b ENSMUSG00000023004 366.95 3812.93 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. mt-Nd2 ENSMUSG00000064345 320.17 3326.84 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
22. Npm1 ENSMUSG00000057113 305.65 3175.97 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Rpl23 ENSMUSG00000071415 297.80 3094.40 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
24. Pkm ENSMUSG00000032294 273.40 2840.86 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
25. Set ENSMUSG00000054766 263.81 2741.21 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
26. Chchd2 ENSMUSG00000070493 258.29 2683.86 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
27. Hmgn1 ENSMUSG00000040681 249.86 2596.26 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
28. Hsp90ab1 ENSMUSG00000023944 248.70 2584.21 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Eef2 ENSMUSG00000034994 243.76 2532.88 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
30. Ubb ENSMUSG00000019505 234.76 2439.36 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Tpt1 ENSMUSG00000060126 230.40 2394.06 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Gm13340 ENSMUSG00000083563 228.94 2378.89 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
33. Rps4x ENSMUSG00000031320 222.84 2315.50 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
34. Rpl4 ENSMUSG00000032399 219.65 2282.35 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Rpl18a ENSMUSG00000045128 201.92 2098.12 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
36. Eef1b2 ENSMUSG00000025967 195.53 2031.73 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
37. Eif4g2 ENSMUSG00000005610 193.50 2010.63 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Rps20 ENSMUSG00000028234 186.24 1935.20 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
39. mt-Nd5 ENSMUSG00000064367 183.04 1901.94 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
40. Hba-x ENSMUSG00000055609 180.72 1877.84 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
41. Hba-a1 ENSMUSG00000069919 180.13 1871.71 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
42. Rps5 ENSMUSG00000012848 178.68 1856.64 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
43. Rps9 ENSMUSG00000006333 160.67 1669.50 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
44. Atp5g3 ENSMUSG00000018770 159.22 1654.43 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Hbb-bh1 ENSMUSG00000052217 156.02 1621.18 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
46. Rplp1 ENSMUSG00000007892 153.40 1593.96 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
47. Fkbp1a ENSMUSG00000032966 147.88 1536.60 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
48. Hsp90aa1 ENSMUSG00000021270 144.69 1503.45 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Ywhab ENSMUSG00000018326 144.40 1500.44 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Eif5a ENSMUSG00000078812 139.75 1452.12 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
51. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 139.46 1449.11 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
52. Rps26 ENSMUSG00000025362 138.88 1443.08 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
53. Tuba1a ENSMUSG00000072235 138.01 1434.04 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
54. Myl6 ENSMUSG00000090841 136.84 1421.89 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
55. Meg3 ENSMUSG00000021268 132.20 1373.67 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
56. Grb10 ENSMUSG00000020176 131.61 1367.54 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
57. Son ENSMUSG00000022961 130.74 1358.50 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
58. Ybx1 ENSMUSG00000028639 129.58 1346.45 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
59. Eef1g ENSMUSG00000071644 129.00 1340.42 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
60. Rps3a1 ENSMUSG00000028081 127.26 1322.34 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
61. Rpl8 ENSMUSG00000003970 126.68 1316.32 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
62. Ncl ENSMUSG00000026234 125.51 1304.16 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
63. Peg3 ENSMUSG00000002265 125.22 1301.14 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
64. Cdk4 ENSMUSG00000006728 123.77 1286.08 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
65. Serbp1 ENSMUSG00000036371 122.61 1274.02 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
66. Stmn1 ENSMUSG00000028832 122.61 1274.02 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
67. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 121.45 1261.97 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
68. Gm8292 ENSMUSG00000100215 117.38 1219.68 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
69. Trim28 ENSMUSG00000005566 117.38 1219.68 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
70. Pcbp1 ENSMUSG00000051695 117.09 1216.67 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
71. Lamp1 ENSMUSG00000031447 113.60 1180.40 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
72. Igfbp4 ENSMUSG00000017493 112.15 1165.34 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
73. Nedd4 ENSMUSG00000032216 112.15 1165.34 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
74. Tmsb4x ENSMUSG00000049775 112.15 1165.34 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
75. Gm5805 ENSMUSG00000061848 111.57 1159.31 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
76. Cdkn1c ENSMUSG00000037664 110.70 1150.27 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
77. Ddx5 ENSMUSG00000020719 110.70 1150.27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
78. Hnrnpc ENSMUSG00000060373 110.11 1144.14 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
79. Ran ENSMUSG00000029430 110.11 1144.14 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
80. Rpl41 ENSMUSG00000093674 109.82 1141.13 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
81. Pbx1 ENSMUSG00000052534 106.92 1110.99 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
82. H3f3b ENSMUSG00000016559 105.47 1095.92 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
83. Crabp1 ENSMUSG00000032291 103.43 1074.73 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
84. Ngfrap1 103.43 1074.73 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
85. Cfl1 ENSMUSG00000056201 102.85 1068.70 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
86. Pabpc1 ENSMUSG00000022283 102.56 1065.69 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
87. Tsc22d1 ENSMUSG00000022010 98.20 1020.38 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
88. Wbp5 97.91 1017.37 WW domain binding protein 5
89. Rpl32 ENSMUSG00000057841 97.62 1014.36 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
90. Rpl37 ENSMUSG00000041841 95.30 990.25 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
91. Cox8a ENSMUSG00000035885 95.01 987.24 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
92. 2810417H13Rik 94.72 984.22 RIKEN cDNA 2810417H13 gene
93. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 94.13 978.09 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
94. Tpm4 ENSMUSG00000031799 92.10 957.00 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
95. Ywhae ENSMUSG00000020849 92.10 957.00 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
96. Erh ENSMUSG00000021131 91.23 947.96 ERH mRNA splicing and mitosis factor [Source:MGI Symbol;Acc:MGI:108089]
97. Paics ENSMUSG00000029247 90.65 941.93 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
98. Hnrnpk ENSMUSG00000021546 89.20 926.87 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
99. Anp32b ENSMUSG00000028333 88.32 917.72 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
100. Calm1 ENSMUSG00000001175 88.32 917.72 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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