Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s27.

Sample reads: 96,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2344.83 24364.93 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2068.98 21498.59 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 1843.76 19158.35 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1618.02 16812.71 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1511.28 15703.58 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co1 ENSMUSG00000064351 993.26 10320.88 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
7. mt-Co3 ENSMUSG00000064358 860.68 8943.25 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
8. mt-Co2 ENSMUSG00000064354 815.53 8474.10 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. mt-Rnr2 ENSMUSG00000064339 777.17 8075.51 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. Eef1a1 ENSMUSG00000037742 752.90 7823.32 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. Actb ENSMUSG00000029580 623.46 6478.32 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. H19 ENSMUSG00000000031 584.58 6074.32 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Hmga2 ENSMUSG00000056758 548.30 5697.34 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
14. Tubb5 ENSMUSG00000001525 533.16 5540.02 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
15. Rpsa ENSMUSG00000032518 513.07 5331.27 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. mt-Nd3 ENSMUSG00000064360 472.88 4913.66 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
17. Tuba1b ENSMUSG00000023004 414.68 4308.90 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
18. Igf2 ENSMUSG00000048583 411.29 4273.68 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Npm1 ENSMUSG00000057113 404.77 4205.93 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Hbb-y ENSMUSG00000052187 385.72 4007.98 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. Mdk ENSMUSG00000027239 378.41 3932.03 midkine [Source:MGI Symbol;Acc:MGI:96949]
22. mt-Nd2 ENSMUSG00000064345 346.57 3601.18 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
23. mt-Nd5 ENSMUSG00000064367 328.82 3416.74 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
24. Rpl23 ENSMUSG00000071415 327.52 3403.23 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
25. Rpl4 ENSMUSG00000032399 312.64 3248.62 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
26. Gm13340 ENSMUSG00000083563 288.37 2996.43 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
27. Set ENSMUSG00000054766 280.28 2912.37 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
28. Rps4x ENSMUSG00000031320 277.41 2882.54 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
29. Hmgn1 ENSMUSG00000040681 266.45 2768.66 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
30. Tpt1 ENSMUSG00000060126 261.23 2714.42 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Ubb ENSMUSG00000019505 253.40 2633.06 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Pkm ENSMUSG00000032294 246.62 2562.61 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Chchd2 ENSMUSG00000070493 245.57 2551.70 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Eif4g2 ENSMUSG00000005610 223.39 2321.23 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Hsp90aa1 ENSMUSG00000021270 205.12 2131.38 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
36. Rpl18a ENSMUSG00000045128 197.03 2047.32 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
37. Eef1b2 ENSMUSG00000025967 189.47 1968.77 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
38. Hsp90ab1 ENSMUSG00000023944 177.98 1849.37 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
39. Atp5g3 ENSMUSG00000018770 161.80 1681.25 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
40. Rps20 ENSMUSG00000028234 161.54 1678.55 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Gm5805 ENSMUSG00000061848 160.50 1667.74 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
42. Rps5 ENSMUSG00000012848 160.50 1667.74 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
43. Gm8292 ENSMUSG00000100215 154.49 1605.29 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
44. Rps9 ENSMUSG00000006333 150.32 1561.96 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
45. Eef2 ENSMUSG00000034994 148.23 1540.25 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
46. Rpl41 ENSMUSG00000093674 147.19 1529.44 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
47. Serbp1 ENSMUSG00000036371 147.19 1529.44 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
48. Rps26 ENSMUSG00000025362 145.62 1513.12 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. Fkbp1a ENSMUSG00000032966 142.75 1483.30 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
50. Ybx1 ENSMUSG00000028639 139.62 1450.78 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
51. Rps3a1 ENSMUSG00000028081 138.31 1437.17 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
52. Eif5a ENSMUSG00000078812 137.27 1426.36 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
53. Rplp1 ENSMUSG00000007892 134.66 1399.24 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
54. Eef1g ENSMUSG00000071644 133.10 1383.03 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
55. Tuba1a ENSMUSG00000072235 131.53 1366.72 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
56. Ncl ENSMUSG00000026234 126.57 1315.18 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
57. Nedd4 ENSMUSG00000032216 125.01 1298.97 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
58. Ywhab ENSMUSG00000018326 123.96 1288.06 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
59. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 123.70 1285.36 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
60. Pbx1 ENSMUSG00000052534 122.40 1271.85 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
61. Grb10 ENSMUSG00000020176 121.35 1260.94 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
62. Rpl8 ENSMUSG00000003970 120.05 1247.43 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
63. Son ENSMUSG00000022961 118.74 1233.82 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
64. Hnrnpc ENSMUSG00000060373 118.48 1231.12 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
65. Peg3 ENSMUSG00000002265 118.22 1228.41 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
66. Pcbp1 ENSMUSG00000051695 115.61 1201.29 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
67. Rpl14-ps1 ENSMUSG00000046721 115.61 1201.29 ribosomal protein L14, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3710579]
68. Cdk4 ENSMUSG00000006728 114.83 1193.19 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
69. Myl6 ENSMUSG00000090841 113.78 1182.28 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
70. Tmsb4x ENSMUSG00000049775 113.52 1179.58 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
71. Wbp5 113.52 1179.58 WW domain binding protein 5
72. Ddx5 ENSMUSG00000020719 113.00 1174.17 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
73. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 113.00 1174.17 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
74. Ran ENSMUSG00000029430 112.48 1168.77 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
75. Cfl1 ENSMUSG00000056201 108.82 1130.74 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
76. Ldha ENSMUSG00000063229 108.82 1130.74 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
77. Pabpc1 ENSMUSG00000022283 108.82 1130.74 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
78. mt-Rnr1 ENSMUSG00000064337 108.82 1130.74 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
79. Mrfap1 ENSMUSG00000055302 108.30 1125.34 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
80. Rpl26 ENSMUSG00000060938 106.22 1103.72 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
81. Hspe1 ENSMUSG00000073676 104.13 1082.01 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
82. Hba-a1 ENSMUSG00000069919 103.61 1076.60 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
83. Gm14586 ENSMUSG00000083621 102.82 1068.39 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
84. Meg3 ENSMUSG00000021268 101.78 1057.59 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
85. Hba-x ENSMUSG00000055609 101.52 1054.89 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
86. Ngfrap1 100.21 1041.27 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
87. Nasp ENSMUSG00000028693 99.95 1038.57 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
88. H3f3b ENSMUSG00000016559 99.43 1033.17 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
89. Cdkn1c ENSMUSG00000037664 98.91 1027.77 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
90. Stmn1 ENSMUSG00000028832 98.65 1025.06 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
91. Rpl32 ENSMUSG00000057841 96.82 1006.05 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
92. Hnrnpk ENSMUSG00000021546 96.56 1003.35 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
93. Trim28 ENSMUSG00000005566 95.78 995.24 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
94. Btf3 ENSMUSG00000021660 94.21 978.93 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
95. Gm10076 ENSMUSG00000060143 93.43 970.82 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
96. Srsf3 ENSMUSG00000071172 93.17 968.12 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
97. Cd24a ENSMUSG00000047139 92.91 965.42 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
98. Tpm4 ENSMUSG00000031799 92.64 962.61 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
99. Lamp1 ENSMUSG00000031447 92.38 959.91 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
100. Scd2 ENSMUSG00000025203 91.60 951.81 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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