Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s26.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2948.97 30641.84 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 1703.09 17696.28 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 1506.69 15655.55 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1317.56 13690.36 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1237.54 12858.90 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 902.77 9380.40 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. Eef1a1 ENSMUSG00000037742 860.49 8941.09 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
8. mt-Rnr2 ENSMUSG00000064339 837.91 8706.46 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. H19 ENSMUSG00000000031 729.10 7575.85 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Co1 ENSMUSG00000064351 640.44 6654.61 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Mdk ENSMUSG00000027239 631.35 6560.16 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. Actb ENSMUSG00000029580 621.65 6459.37 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Co3 ENSMUSG00000064358 559.06 5809.02 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Rpsa ENSMUSG00000032518 539.81 5609.00 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Hmga2 ENSMUSG00000056758 497.38 5168.12 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
16. Tubb5 ENSMUSG00000001525 486.92 5059.44 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
17. Igf2 ENSMUSG00000048583 453.43 4711.45 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. mt-Nd3 ENSMUSG00000064360 380.84 3957.19 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
19. mt-Nd2 ENSMUSG00000064345 364.17 3783.98 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
20. Tuba1b ENSMUSG00000023004 349.92 3635.91 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Npm1 ENSMUSG00000057113 323.55 3361.91 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Set ENSMUSG00000054766 309.76 3218.62 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
23. mt-Nd5 ENSMUSG00000064367 282.18 2932.05 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
24. Rpl23 ENSMUSG00000071415 274.00 2847.05 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
25. Hmgn1 ENSMUSG00000040681 273.54 2842.27 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
26. Hsp90ab1 ENSMUSG00000023944 256.72 2667.50 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
27. Rpl4 ENSMUSG00000032399 253.69 2636.01 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
28. Ubb ENSMUSG00000019505 250.36 2601.41 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Chchd2 ENSMUSG00000070493 248.54 2582.50 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
30. Pkm ENSMUSG00000032294 236.57 2458.13 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
31. Tpt1 ENSMUSG00000060126 221.56 2302.16 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Eif4g2 ENSMUSG00000005610 212.77 2210.83 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Eef1b2 ENSMUSG00000025967 209.59 2177.78 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
34. Rps4x ENSMUSG00000031320 199.13 2069.10 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
35. Rpl18a ENSMUSG00000045128 182.92 1900.67 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
36. Rps9 ENSMUSG00000006333 173.37 1801.43 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
37. Hsp90aa1 ENSMUSG00000021270 168.22 1747.92 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
38. Rplp1 ENSMUSG00000007892 163.97 1703.76 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
39. Eif5a ENSMUSG00000078812 162.76 1691.19 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. Eef2 ENSMUSG00000034994 161.85 1681.73 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
41. Gm13340 ENSMUSG00000083563 157.91 1640.79 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
42. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 153.82 1598.30 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
43. Serbp1 ENSMUSG00000036371 148.37 1541.67 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
44. Ybx1 ENSMUSG00000028639 148.21 1540.00 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
45. Ncl ENSMUSG00000026234 147.91 1536.89 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
46. Atp5g3 ENSMUSG00000018770 146.24 1519.53 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Rps20 ENSMUSG00000028234 144.12 1497.51 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
48. Rps3a1 ENSMUSG00000028081 142.76 1483.38 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
49. Fkbp1a ENSMUSG00000032966 142.61 1481.82 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
50. Pbx1 ENSMUSG00000052534 141.24 1467.58 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
51. Tuba1a ENSMUSG00000072235 138.06 1434.54 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
52. Rps5 ENSMUSG00000012848 137.76 1431.42 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
53. Rpl8 ENSMUSG00000003970 137.30 1426.64 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
54. Hbb-y ENSMUSG00000052187 134.73 1399.94 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
55. Rps26 ENSMUSG00000025362 134.27 1395.16 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
56. Ywhab ENSMUSG00000018326 132.91 1381.03 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
57. Eef1g ENSMUSG00000071644 126.69 1316.40 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
58. Gm8292 ENSMUSG00000100215 125.63 1305.38 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
59. Hnrnpc ENSMUSG00000060373 124.42 1292.81 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
60. Rrm2 ENSMUSG00000020649 122.45 1272.34 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
61. Cdk4 ENSMUSG00000006728 121.39 1261.33 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
62. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 118.06 1226.72 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
63. Nedd4 ENSMUSG00000032216 117.45 1220.39 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
64. Grb10 ENSMUSG00000020176 116.99 1215.61 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
65. Pcbp1 ENSMUSG00000051695 115.63 1201.48 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
66. Ddx5 ENSMUSG00000020719 114.57 1190.46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
67. Son ENSMUSG00000022961 112.30 1166.87 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
68. Stmn1 ENSMUSG00000028832 111.24 1155.86 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
69. H3f3b ENSMUSG00000016559 110.02 1143.18 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
70. Trim28 ENSMUSG00000005566 110.02 1143.18 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
71. Gm5805 ENSMUSG00000061848 107.90 1121.16 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
72. Pabpc1 ENSMUSG00000022283 106.84 1110.14 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
73. mt-Rnr1 ENSMUSG00000064337 106.84 1110.14 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
74. Cfl1 ENSMUSG00000056201 106.69 1108.58 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
75. Ran ENSMUSG00000029430 106.69 1108.58 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
76. Myl6 ENSMUSG00000090841 106.08 1102.24 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
77. Gm14586 ENSMUSG00000083621 103.20 1072.32 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
78. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 102.29 1062.86 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
79. Cd24a ENSMUSG00000047139 101.54 1055.07 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
80. Mrfap1 ENSMUSG00000055302 101.39 1053.51 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
81. Meg3 ENSMUSG00000021268 100.32 1042.39 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
82. Btf3 ENSMUSG00000021660 100.17 1040.84 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
83. Ngfrap1 100.02 1039.28 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
84. Tmsb4x ENSMUSG00000049775 99.26 1031.38 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
85. Paics ENSMUSG00000029247 97.90 1017.25 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
86. Banf1 ENSMUSG00000024844 96.38 1001.45 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
87. Cdkn1c ENSMUSG00000037664 96.38 1001.45 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
88. Fkbp4 ENSMUSG00000030357 95.78 995.22 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
89. Wbp5 95.48 992.10 WW domain binding protein 5
90. Nasp ENSMUSG00000028693 95.02 987.32 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
91. Hnrnpk ENSMUSG00000021546 94.57 982.65 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
92. Peg3 ENSMUSG00000002265 93.96 976.31 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
93. 2810417H13Rik 93.50 971.53 RIKEN cDNA 2810417H13 gene
94. Cox8a ENSMUSG00000035885 91.99 955.84 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
95. Hmgb3 ENSMUSG00000015217 91.53 951.06 high mobility group box 3 [Source:MGI Symbol;Acc:MGI:1098219]
96. Hnrnpa2b1 ENSMUSG00000004980 90.78 943.27 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
97. Tsc22d1 ENSMUSG00000022010 89.87 933.81 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
98. Ldha ENSMUSG00000063229 89.11 925.91 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
99. Anp32b ENSMUSG00000028333 87.44 908.56 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
100. Srsf3 ENSMUSG00000071172 86.69 900.77 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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