Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s25.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 7060.65 73360.93 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 2839.30 29500.64 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. Hmga2 ENSMUSG00000056758 1867.81 19406.75 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
4. mt-Atp6 ENSMUSG00000064357 1509.28 15681.59 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Cytb ENSMUSG00000064370 1364.71 14179.49 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
6. mt-Nd1 ENSMUSG00000064341 965.71 10033.83 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Nd3 ENSMUSG00000064360 942.58 9793.51 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
8. mt-Nd4 ENSMUSG00000064363 861.62 8952.33 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
9. mt-Co3 ENSMUSG00000064358 728.62 7570.44 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. mt-Co2 ENSMUSG00000064354 659.23 6849.47 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
11. Eef1a1 ENSMUSG00000037742 578.27 6008.29 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. Npm1 ENSMUSG00000057113 520.44 5407.43 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
13. mt-Co1 ENSMUSG00000064351 474.18 4926.78 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
14. Set ENSMUSG00000054766 439.48 4566.25 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
15. mt-Nd5 ENSMUSG00000064367 439.48 4566.25 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
16. mt-Nd2 ENSMUSG00000064345 416.35 4325.92 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Chchd2 ENSMUSG00000070493 381.66 3965.49 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
18. Rpsa ENSMUSG00000032518 375.87 3905.33 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Actb ENSMUSG00000029580 358.53 3725.17 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
20. Eif4g2 ENSMUSG00000005610 318.05 3304.57 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
21. Tpt1 ENSMUSG00000060126 318.05 3304.57 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
22. Hsp90aa1 ENSMUSG00000021270 300.70 3124.31 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
23. Ddx3x ENSMUSG00000000787 289.13 3004.09 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
24. Tubb5 ENSMUSG00000001525 289.13 3004.09 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Wbp5 289.13 3004.09 WW domain binding protein 5
26. Fstl1 ENSMUSG00000022816 271.79 2823.93 follistatin-like 1 [Source:MGI Symbol;Acc:MGI:102793]
27. Eef1b2 ENSMUSG00000025967 266.00 2763.77 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
28. Igf2 ENSMUSG00000048583 266.00 2763.77 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
29. Gm5805 ENSMUSG00000061848 248.66 2583.60 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
30. Rpl23 ENSMUSG00000071415 248.66 2583.60 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
31. H19 ENSMUSG00000000031 242.87 2523.45 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
32. mt-Rnr1 ENSMUSG00000064337 237.09 2463.39 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
33. Hmgn1 ENSMUSG00000040681 213.96 2223.07 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
34. Ybx1 ENSMUSG00000028639 213.96 2223.07 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
35. Pcbp1 ENSMUSG00000051695 202.39 2102.85 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
36. Mdk ENSMUSG00000027239 196.61 2042.80 midkine [Source:MGI Symbol;Acc:MGI:96949]
37. Ubb ENSMUSG00000019505 196.61 2042.80 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
38. Flrt3 ENSMUSG00000051379 190.83 1982.74 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
39. Pabpc1 ENSMUSG00000022283 190.83 1982.74 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
40. Serbp1 ENSMUSG00000036371 185.05 1922.69 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
41. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 179.26 1862.53 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
42. Tuba1b ENSMUSG00000023004 179.26 1862.53 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
43. Csde1 ENSMUSG00000068823 173.48 1802.48 cold shock domain containing E1, RNA binding [Source:MGI Symbol;Acc:MGI:92356]
44. Hsp90ab1 ENSMUSG00000023944 173.48 1802.48 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
45. Rpl4 ENSMUSG00000032399 173.48 1802.48 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
46. Asb4 ENSMUSG00000042607 167.70 1742.42 ankyrin repeat and SOCS box-containing 4 [Source:MGI Symbol;Acc:MGI:1929751]
47. Hspe1 ENSMUSG00000073676 167.70 1742.42 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
48. Rps20 ENSMUSG00000028234 167.70 1742.42 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Rps4x ENSMUSG00000031320 167.70 1742.42 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
50. Hnrnpk ENSMUSG00000021546 161.92 1682.37 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
51. Marcks ENSMUSG00000069662 156.13 1622.21 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
52. Ywhab ENSMUSG00000018326 156.13 1622.21 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Peg3 ENSMUSG00000002265 150.35 1562.15 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
54. Rpl36a-ps1 ENSMUSG00000060377 150.35 1562.15 ribosomal protein L36A, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3642585]
55. Top1 ENSMUSG00000070544 150.35 1562.15 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
56. Atp5g3 ENSMUSG00000018770 144.57 1502.10 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
57. Rps14 ENSMUSG00000024608 144.57 1502.10 ribosomal protein S14 [Source:MGI Symbol;Acc:MGI:98107]
58. Kif5b ENSMUSG00000006740 138.78 1441.94 kinesin family member 5B [Source:MGI Symbol;Acc:MGI:1098268]
59. Lrrc17 ENSMUSG00000039883 138.78 1441.94 leucine rich repeat containing 17 [Source:MGI Symbol;Acc:MGI:1921761]
60. Rps5 ENSMUSG00000012848 138.78 1441.94 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
61. Caprin1 ENSMUSG00000027184 133.00 1381.88 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
62. Rbm39 ENSMUSG00000027620 133.00 1381.88 RNA binding motif protein 39 [Source:MGI Symbol;Acc:MGI:2157953]
63. Rplp1 ENSMUSG00000007892 133.00 1381.88 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
64. Hbb-y ENSMUSG00000052187 127.22 1321.83 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
65. Prdx1 ENSMUSG00000028691 127.22 1321.83 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
66. Rpl32 ENSMUSG00000057841 127.22 1321.83 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
67. Rrm2 ENSMUSG00000020649 127.22 1321.83 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
68. Sfpq ENSMUSG00000028820 127.22 1321.83 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
69. Gm14586 ENSMUSG00000083621 121.44 1261.77 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
70. Hint1 ENSMUSG00000020267 121.44 1261.77 histidine triad nucleotide binding protein 1 [Source:MGI Symbol;Acc:MGI:1321133]
71. Srsf1 ENSMUSG00000018379, ENSMUSG00000098301 121.44 1261.77 serine/arginine-rich splicing factor 1 [Source:MGI Symbol;Acc:MGI:98283]
72. Gm8292 ENSMUSG00000100215 115.65 1201.62 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
73. Hspa5 ENSMUSG00000026864 115.65 1201.62 heat shock protein 5 [Source:MGI Symbol;Acc:MGI:95835]
74. Pbrm1 ENSMUSG00000042323 115.65 1201.62 polybromo 1 [Source:MGI Symbol;Acc:MGI:1923998]
75. mt-Atp8 ENSMUSG00000064356 115.65 1201.62 mitochondrially encoded ATP synthase 8 [Source:MGI Symbol;Acc:MGI:99926]
76. Dek ENSMUSG00000021377 109.87 1141.56 DEK oncogene (DNA binding) [Source:MGI Symbol;Acc:MGI:1926209]
77. Mrfap1 ENSMUSG00000055302 109.87 1141.56 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
78. Myl6 ENSMUSG00000090841 109.87 1141.56 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
79. Rpl21 ENSMUSG00000041453 109.87 1141.56 ribosomal protein L21 [Source:MGI Symbol;Acc:MGI:1278340]
80. Scd2 ENSMUSG00000025203 109.87 1141.56 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
81. Srsf3 ENSMUSG00000071172 109.87 1141.56 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
82. Hnrnpab ENSMUSG00000020358 104.09 1081.51 heterogeneous nuclear ribonucleoprotein A/B [Source:MGI Symbol;Acc:MGI:1330294]
83. Mapre1 ENSMUSG00000027479 104.09 1081.51 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
84. Matr3 ENSMUSG00000037236 104.09 1081.51 matrin 3 [Source:MGI Symbol;Acc:MGI:1298379]
85. Nucks1 ENSMUSG00000026434 104.09 1081.51 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
86. Pbx1 ENSMUSG00000052534 104.09 1081.51 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
87. Pkm ENSMUSG00000032294 104.09 1081.51 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
88. Rpl13a ENSMUSG00000074129 104.09 1081.51 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
89. Rpl26 ENSMUSG00000060938 104.09 1081.51 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
90. Rpl36a ENSMUSG00000079435 104.09 1081.51 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
91. Rps3a1 ENSMUSG00000028081 104.09 1081.51 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
92. Rps9 ENSMUSG00000006333 104.09 1081.51 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
93. Top2a ENSMUSG00000020914 104.09 1081.51 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
94. Calm1 ENSMUSG00000001175 98.31 1021.45 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
95. Gm10076 ENSMUSG00000060143 98.31 1021.45 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
96. Gm10800 ENSMUSG00000075014 98.31 1021.45 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
97. Gm2000 ENSMUSG00000078193 98.31 1021.45 predicted gene 2000 [Source:MGI Symbol;Acc:MGI:3780170]
98. Gm5963 ENSMUSG00000052192 98.31 1021.45 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
99. Hnrnpa2b1 ENSMUSG00000004980 98.31 1021.45 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
100. Malat1 ENSMUSG00000092341 98.31 1021.45 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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