Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s23.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2308.78 23988.81 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 1811.47 18821.63 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 1610.63 16734.85 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Rnr2 ENSMUSG00000064339 1484.90 15428.49 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
5. mt-Nd1 ENSMUSG00000064341 1470.83 15282.30 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1386.73 14408.48 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1095.32 11380.65 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Co2 ENSMUSG00000064354 822.47 8545.67 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. H19 ENSMUSG00000000031 769.03 7990.42 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Eef1a1 ENSMUSG00000037742 719.24 7473.09 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. Actb ENSMUSG00000029580 687.74 7145.79 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Mdk ENSMUSG00000027239 628.39 6529.13 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. Tubb5 ENSMUSG00000001525 598.01 6213.48 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
14. Hmga2 ENSMUSG00000056758 578.04 6005.98 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
15. mt-Co3 ENSMUSG00000064358 536.41 5573.44 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Igf2 ENSMUSG00000048583 517.56 5377.58 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. mt-Nd5 ENSMUSG00000064367 472.28 4907.11 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. Rpsa ENSMUSG00000032518 461.02 4790.11 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. mt-Nd3 ENSMUSG00000064360 420.24 4366.40 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
20. Tuba1b ENSMUSG00000023004 413.49 4296.27 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. mt-Nd2 ENSMUSG00000064345 361.45 3755.56 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
22. Npm1 ENSMUSG00000057113 326.57 3393.15 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Gm13340 ENSMUSG00000083563 312.23 3244.15 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
24. Pkm ENSMUSG00000032294 296.47 3080.40 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
25. Rpl23 ENSMUSG00000071415 293.66 3051.20 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
26. Set ENSMUSG00000054766 292.25 3036.55 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
27. Rpl4 ENSMUSG00000032399 270.31 2808.59 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
28. Chchd2 ENSMUSG00000070493 243.03 2525.14 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
29. Eif4g2 ENSMUSG00000005610 241.62 2510.49 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Rpl18a ENSMUSG00000045128 236.56 2457.92 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
31. Ubb ENSMUSG00000019505 234.31 2434.54 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Rps4x ENSMUSG00000031320 222.50 2311.83 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
33. Hmgn1 ENSMUSG00000040681 210.12 2183.20 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
34. Hsp90ab1 ENSMUSG00000023944 205.34 2133.53 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Pbx1 ENSMUSG00000052534 198.02 2057.48 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
36. Tpt1 ENSMUSG00000060126 197.74 2054.57 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. Eef1b2 ENSMUSG00000025967 196.34 2040.02 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
38. Cdkn1c ENSMUSG00000037664 192.96 2004.90 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
39. Hsp90aa1 ENSMUSG00000021270 191.84 1993.27 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
40. Eef2 ENSMUSG00000034994 165.11 1715.53 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
41. Tuba1a ENSMUSG00000072235 160.89 1671.69 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
42. Fkbp1a ENSMUSG00000032966 158.08 1642.49 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
43. Serbp1 ENSMUSG00000036371 155.55 1616.20 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
44. Atp5g3 ENSMUSG00000018770 155.27 1613.29 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Rps9 ENSMUSG00000006333 153.02 1589.92 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
46. Ybx1 ENSMUSG00000028639 153.02 1589.92 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
47. Rplp1 ENSMUSG00000007892 152.17 1581.08 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
48. Rps20 ENSMUSG00000028234 150.21 1560.72 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Rps3a1 ENSMUSG00000028081 142.89 1484.66 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
50. Meg3 ENSMUSG00000021268 142.33 1478.84 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
51. Nedd4 ENSMUSG00000032216 137.55 1429.18 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
52. Rps5 ENSMUSG00000012848 137.55 1429.18 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
53. Eef1g ENSMUSG00000071644 136.42 1417.44 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
54. Eif5a ENSMUSG00000078812 136.42 1417.44 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
55. Ncl ENSMUSG00000026234 132.48 1376.50 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
56. Gm15459 ENSMUSG00000100801 131.64 1367.77 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
57. Gm5805 ENSMUSG00000061848 130.23 1353.12 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
58. Cdk4 ENSMUSG00000006728 129.95 1350.21 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
59. Son ENSMUSG00000022961 129.95 1350.21 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
60. Trim28 ENSMUSG00000005566 128.83 1338.58 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
61. Peg3 ENSMUSG00000002265 128.27 1332.76 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
62. Tmsb4x ENSMUSG00000049775 127.70 1326.84 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
63. Rps26 ENSMUSG00000025362 126.58 1315.20 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
64. Grb10 ENSMUSG00000020176 126.30 1312.29 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
65. Cfl1 ENSMUSG00000056201 125.73 1306.37 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
66. Gm8292 ENSMUSG00000100215 122.64 1274.26 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
67. Rpl8 ENSMUSG00000003970 120.67 1253.79 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
68. Ywhab ENSMUSG00000018326 120.67 1253.79 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
69. Hnrnpc ENSMUSG00000060373 120.11 1247.97 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
70. Pcbp1 ENSMUSG00000051695 118.42 1230.41 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
71. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 115.61 1201.22 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
72. Cd24a ENSMUSG00000047139 111.95 1163.19 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
73. Ddx5 ENSMUSG00000020719 110.83 1151.55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
74. Pabpc1 ENSMUSG00000022283 105.48 1095.96 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. 2810417H13Rik 102.95 1069.68 RIKEN cDNA 2810417H13 gene
76. Stmn1 ENSMUSG00000028832 102.11 1060.95 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
77. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 100.14 1040.48 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
78. Ran ENSMUSG00000029430 99.29 1031.65 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
79. Srsf3 ENSMUSG00000071172 95.36 990.81 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
80. mt-Rnr1 ENSMUSG00000064337 95.36 990.81 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
81. Ldha ENSMUSG00000063229 95.07 987.80 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
82. Fkbp4 ENSMUSG00000030357 93.10 967.33 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
83. Igfbp4 ENSMUSG00000017493 91.98 955.70 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
84. Vcp ENSMUSG00000028452 91.70 952.79 valosin containing protein [Source:MGI Symbol;Acc:MGI:99919]
85. H3f3b ENSMUSG00000016559 91.42 949.88 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
86. Crabp1 ENSMUSG00000032291 90.29 938.14 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
87. Wbp5 90.01 935.23 WW domain binding protein 5
88. Gm14586 ENSMUSG00000083621 89.45 929.41 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Scd2 ENSMUSG00000025203 89.17 926.50 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
90. Ssbp3 ENSMUSG00000061887 89.17 926.50 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
91. Banf1 ENSMUSG00000024844 88.89 923.59 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
92. Hspe1 ENSMUSG00000073676 88.89 923.59 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
93. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 88.60 920.58 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
94. Hbb-y ENSMUSG00000052187 88.32 917.67 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
95. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 88.32 917.67 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
96. Cox8a ENSMUSG00000035885 87.48 908.94 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
97. Rrm2 ENSMUSG00000020649 87.48 908.94 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
98. Hnrnpk ENSMUSG00000021546 87.20 906.03 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
99. Paics ENSMUSG00000029247 86.64 900.21 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
100. Rpl32 ENSMUSG00000057841 85.51 888.47 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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