Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s21.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Atp6 ENSMUSG00000064357 1986.44 20638.94 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
2. mt-Cytb ENSMUSG00000064370 1955.15 20313.84 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. Ptma ENSMUSG00000026238 1799.65 18698.21 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd1 ENSMUSG00000064341 1619.41 16825.53 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1427.96 14836.38 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Rnr2 ENSMUSG00000064339 1333.63 13856.30 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
7. mt-Co1 ENSMUSG00000064351 1107.62 11508.08 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Co2 ENSMUSG00000064354 1078.20 11202.41 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. Actb ENSMUSG00000029580 903.56 9387.91 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. H19 ENSMUSG00000000031 838.19 8708.72 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Co3 ENSMUSG00000064358 760.21 7898.52 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Eef1a1 ENSMUSG00000037742 754.14 7835.45 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Rpsa ENSMUSG00000032518 603.78 6273.22 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
14. mt-Nd3 ENSMUSG00000064360 532.33 5530.86 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Hmga2 ENSMUSG00000056758 507.12 5268.93 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
16. Igf2 ENSMUSG00000048583 489.84 5089.40 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Tubb5 ENSMUSG00000001525 472.56 4909.86 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
18. mt-Nd2 ENSMUSG00000064345 446.88 4643.05 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
19. mt-Nd5 ENSMUSG00000064367 437.54 4546.00 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Mdk ENSMUSG00000027239 398.31 4138.41 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Npm1 ENSMUSG00000057113 374.97 3895.91 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tuba1b ENSMUSG00000023004 328.27 3410.70 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Rpl23 ENSMUSG00000071415 327.34 3401.03 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
24. Set ENSMUSG00000054766 326.40 3391.27 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
25. Chchd2 ENSMUSG00000070493 312.39 3245.71 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
26. Pkm ENSMUSG00000032294 289.05 3003.20 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Tpt1 ENSMUSG00000060126 286.71 2978.89 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Gm13340 ENSMUSG00000083563 277.84 2886.73 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
29. Cdkn1c ENSMUSG00000037664 265.70 2760.60 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
30. Rps4x ENSMUSG00000031320 264.30 2746.05 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
31. Rpl4 ENSMUSG00000032399 263.36 2736.29 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Ubb ENSMUSG00000019505 249.82 2595.61 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Hmgn1 ENSMUSG00000040681 248.42 2581.06 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
34. Rpl18a ENSMUSG00000045128 238.62 2479.24 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
35. Eef1b2 ENSMUSG00000025967 228.34 2372.43 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
36. Rplp1 ENSMUSG00000007892 223.67 2323.91 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
37. Hsp90aa1 ENSMUSG00000021270 223.21 2319.13 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
38. Eif4g2 ENSMUSG00000005610 209.20 2173.57 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Tmsb4x ENSMUSG00000049775 203.59 2115.28 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
40. Tuba1a ENSMUSG00000072235 195.19 2028.01 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
41. Rps20 ENSMUSG00000028234 181.65 1887.33 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
42. Myl6 ENSMUSG00000090841 176.98 1838.81 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
43. Hsp90ab1 ENSMUSG00000023944 176.51 1833.92 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
44. Rps5 ENSMUSG00000012848 175.58 1824.26 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
45. Rps26 ENSMUSG00000025362 172.77 1795.07 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Ywhab ENSMUSG00000018326 171.84 1785.40 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
47. Gm8292 ENSMUSG00000100215 170.44 1770.86 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
48. Rps3a1 ENSMUSG00000028081 167.64 1741.77 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
49. Gm5805 ENSMUSG00000061848 166.24 1727.22 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
50. mt-Rnr1 ENSMUSG00000064337 162.50 1688.36 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
51. Serbp1 ENSMUSG00000036371 156.43 1625.29 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
52. Fkbp1a ENSMUSG00000032966 154.10 1601.09 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
53. Ybx1 ENSMUSG00000028639 154.10 1601.09 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
54. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 151.29 1571.89 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
55. Atp5g3 ENSMUSG00000018770 149.89 1557.34 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
56. Eif5a ENSMUSG00000078812 148.03 1538.02 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
57. Hnrnpc ENSMUSG00000060373 147.56 1533.14 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
58. Pbx1 ENSMUSG00000052534 146.62 1523.37 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
59. Acta2 ENSMUSG00000035783 141.96 1474.95 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
60. Grb10 ENSMUSG00000020176 136.35 1416.66 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
61. Eef2 ENSMUSG00000034994 134.48 1397.24 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
62. Peg3 ENSMUSG00000002265 133.55 1387.57 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
63. Cfl1 ENSMUSG00000056201 133.08 1382.69 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
64. Nedd4 ENSMUSG00000032216 132.62 1377.91 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
65. Rps9 ENSMUSG00000006333 131.22 1363.36 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
66. Rpl8 ENSMUSG00000003970 126.08 1309.96 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
67. Son ENSMUSG00000022961 123.28 1280.87 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
68. Ccnd2 ENSMUSG00000000184 119.07 1237.13 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
69. Hspe1 ENSMUSG00000073676 117.21 1217.80 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
70. 2810417H13Rik 116.27 1208.04 RIKEN cDNA 2810417H13 gene
71. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 114.40 1188.61 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
72. Cdk4 ENSMUSG00000006728 113.94 1183.83 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
73. Gm14586 ENSMUSG00000083621 113.94 1183.83 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
74. Ran ENSMUSG00000029430 113.47 1178.94 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
75. Rpl36a ENSMUSG00000079435 113.47 1178.94 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
76. Gm5963 ENSMUSG00000052192 113.00 1174.06 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
77. Ncl ENSMUSG00000026234 113.00 1174.06 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
78. Pabpc1 ENSMUSG00000022283 113.00 1174.06 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
79. Pcbp1 ENSMUSG00000051695 111.14 1154.74 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
80. Prdx1 ENSMUSG00000028691 110.67 1149.85 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
81. Rpl32 ENSMUSG00000057841 110.20 1144.97 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
82. Eef1g ENSMUSG00000071644 108.33 1125.54 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
83. Ldha ENSMUSG00000063229 106.00 1101.33 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
84. Rpl36a-ps1 ENSMUSG00000060377 105.07 1091.67 ribosomal protein L36A, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3642585]
85. Lamp1 ENSMUSG00000031447 101.80 1057.69 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
86. Wbp5 101.80 1057.69 WW domain binding protein 5
87. Marcks ENSMUSG00000069662 100.40 1043.15 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
88. Hnrnpk ENSMUSG00000021546 99.93 1038.26 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
89. Fstl1 ENSMUSG00000022816 98.99 1028.50 follistatin-like 1 [Source:MGI Symbol;Acc:MGI:102793]
90. Scd2 ENSMUSG00000025203 98.99 1028.50 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
91. Ddx5 ENSMUSG00000020719 98.53 1023.72 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
92. Rrm2 ENSMUSG00000020649 98.53 1023.72 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
93. Calm1 ENSMUSG00000001175 97.13 1009.17 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
94. Btf3 ENSMUSG00000021660 96.66 1004.29 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
95. H3f3b ENSMUSG00000016559 95.73 994.63 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
96. Rpl13a ENSMUSG00000074129 95.26 989.74 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
97. Srsf3 ENSMUSG00000071172 95.26 989.74 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
98. Gm10076 ENSMUSG00000060143 93.86 975.20 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
99. Gm15459 ENSMUSG00000100801 93.86 975.20 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
100. Rpl21 ENSMUSG00000041453 92.46 960.65 ribosomal protein L21 [Source:MGI Symbol;Acc:MGI:1278340]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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