Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s20.

Sample reads: 96,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2924.79 30391.49 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 1615.65 16788.22 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Atp6 ENSMUSG00000064357 1296.88 13475.88 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Cytb ENSMUSG00000064370 1198.80 12456.73 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Nd1 ENSMUSG00000064341 854.14 8875.37 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 791.48 8224.27 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. Eef1a1 ENSMUSG00000037742 783.30 8139.27 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
8. H19 ENSMUSG00000000031 741.07 7700.46 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. Actb ENSMUSG00000029580 738.35 7672.19 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. Hmga2 ENSMUSG00000056758 675.68 7020.99 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
11. mt-Co2 ENSMUSG00000064354 667.51 6936.10 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
12. mt-Co1 ENSMUSG00000064351 606.21 6299.13 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
13. Rpsa ENSMUSG00000032518 572.15 5945.21 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
14. mt-Co3 ENSMUSG00000064358 542.18 5633.79 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Tubb5 ENSMUSG00000001525 539.46 5605.53 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
16. mt-Nd3 ENSMUSG00000064360 528.56 5492.27 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
17. Npm1 ENSMUSG00000057113 483.61 5025.19 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
18. Mdk ENSMUSG00000027239 437.29 4543.88 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Set ENSMUSG00000054766 420.94 4373.99 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
20. Tuba1b ENSMUSG00000023004 401.87 4175.83 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Igf2 ENSMUSG00000048583 375.99 3906.91 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. Tpt1 ENSMUSG00000060126 339.20 3524.63 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
23. Chchd2 ENSMUSG00000070493 333.76 3468.10 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
24. Rpl23 ENSMUSG00000071415 324.22 3368.97 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
25. Eif4g2 ENSMUSG00000005610 303.79 3156.68 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
26. Hmgn1 ENSMUSG00000040681 301.06 3128.31 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
27. mt-Nd2 ENSMUSG00000064345 276.54 2873.53 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
28. Rpl4 ENSMUSG00000032399 265.64 2760.26 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
29. Ubb ENSMUSG00000019505 264.28 2746.13 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Hsp90aa1 ENSMUSG00000021270 253.38 2632.87 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
31. Hsp90ab1 ENSMUSG00000023944 237.03 2462.98 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Ybx1 ENSMUSG00000028639 226.14 2349.82 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
33. Eef1b2 ENSMUSG00000025967 224.77 2335.58 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
34. Rps4x ENSMUSG00000031320 215.24 2236.56 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
35. Gm5805 ENSMUSG00000061848 213.88 2222.43 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
36. Ccnd2 ENSMUSG00000000184 200.25 2080.80 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
37. Pkm ENSMUSG00000032294 196.17 2038.40 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
38. Atp5g3 ENSMUSG00000018770 192.08 1995.90 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
39. Rplp1 ENSMUSG00000007892 192.08 1995.90 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
40. mt-Nd5 ENSMUSG00000064367 187.99 1953.40 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
41. Ywhab ENSMUSG00000018326 185.27 1925.14 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
42. Cdkn1c ENSMUSG00000037664 183.91 1911.01 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
43. Rpl18a ENSMUSG00000045128 183.91 1911.01 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
44. Ddx3x ENSMUSG00000000787 179.82 1868.51 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
45. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 178.46 1854.38 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
46. Pcbp1 ENSMUSG00000051695 178.46 1854.38 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
47. Tmsb4x ENSMUSG00000049775 177.09 1840.14 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
48. Peg3 ENSMUSG00000002265 175.73 1826.01 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
49. Rps20 ENSMUSG00000028234 175.73 1826.01 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
50. Tuba1a ENSMUSG00000072235 166.20 1726.98 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
51. Gm8292 ENSMUSG00000100215 160.75 1670.35 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
52. Pabpc1 ENSMUSG00000022283 153.94 1599.59 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
53. Ran ENSMUSG00000029430 153.94 1599.59 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
54. Serbp1 ENSMUSG00000036371 152.57 1585.35 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
55. Eif5a ENSMUSG00000078812 151.21 1571.22 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
56. Myl6 ENSMUSG00000090841 149.85 1557.09 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
57. Rpl8 ENSMUSG00000003970 148.49 1542.96 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
58. Rps5 ENSMUSG00000012848 148.49 1542.96 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
59. Hnrnpc ENSMUSG00000060373 147.12 1528.72 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
60. Hspe1 ENSMUSG00000073676 144.40 1500.46 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
61. Gm13340 ENSMUSG00000083563 140.31 1457.96 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
62. Rps9 ENSMUSG00000006333 137.59 1429.70 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
63. Marcks ENSMUSG00000069662 133.50 1387.20 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
64. Eef2 ENSMUSG00000034994 132.14 1373.07 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
65. Gm14586 ENSMUSG00000083621 132.14 1373.07 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
66. Rpl26 ENSMUSG00000060938 132.14 1373.07 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
67. Morf4l2 ENSMUSG00000031422 128.05 1330.57 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
68. Rps26 ENSMUSG00000025362 128.05 1330.57 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
69. Fkbp1a ENSMUSG00000032966 125.33 1302.30 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
70. Wbp5 125.33 1302.30 WW domain binding protein 5
71. Grb10 ENSMUSG00000020176 123.97 1288.17 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
72. Hnrnpk ENSMUSG00000021546 123.97 1288.17 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
73. Rpl32 ENSMUSG00000057841 122.60 1273.94 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
74. Sfpq ENSMUSG00000028820 121.24 1259.80 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
75. Top1 ENSMUSG00000070544 119.88 1245.67 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
76. Gm10800 ENSMUSG00000075014 118.52 1231.54 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
77. H3f3b ENSMUSG00000016559 118.52 1231.54 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
78. Pbx1 ENSMUSG00000052534 118.52 1231.54 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
79. Btf3 ENSMUSG00000021660 114.43 1189.04 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
80. 2810417H13Rik 113.07 1174.91 RIKEN cDNA 2810417H13 gene
81. Rps3a1 ENSMUSG00000028081 113.07 1174.91 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
82. Son ENSMUSG00000022961 111.71 1160.78 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
83. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 108.98 1132.41 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
84. mt-Rnr1 ENSMUSG00000064337 108.98 1132.41 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
85. Rpl41 ENSMUSG00000093674 107.62 1118.28 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
86. Sub1 ENSMUSG00000022205 107.62 1118.28 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
87. Rrm2 ENSMUSG00000020649 106.26 1104.15 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
88. Gnb2l1 Gnb2l1 104.89 1089.91
89. Rpl13a ENSMUSG00000074129 104.89 1089.91 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
90. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 104.89 1089.91 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
91. Stmn1 ENSMUSG00000028832 104.89 1089.91 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
92. Csde1 ENSMUSG00000068823 103.53 1075.78 cold shock domain containing E1, RNA binding [Source:MGI Symbol;Acc:MGI:92356]
93. Rpl36a ENSMUSG00000079435 103.53 1075.78 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
94. Paics ENSMUSG00000029247 102.17 1061.65 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
95. Srsf3 ENSMUSG00000071172 102.17 1061.65 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
96. Ncl ENSMUSG00000026234 99.45 1033.38 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
97. Prdx1 ENSMUSG00000028691 99.45 1033.38 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
98. Scd2 ENSMUSG00000025203 99.45 1033.38 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
99. Hnrnpa2b1 ENSMUSG00000004980 96.72 1005.02 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
100. Gm5963 ENSMUSG00000052192 95.36 990.89 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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