Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s2.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 3956.65 41111.04 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 2434.30 25293.27 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd1 ENSMUSG00000064341 1152.74 11977.39 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 1118.34 11619.96 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Cytb ENSMUSG00000064370 1081.75 11239.78 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
6. Hbb-y ENSMUSG00000052187 928.78 9650.36 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
7. Actb ENSMUSG00000029580 822.65 8547.63 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
8. mt-Nd4 ENSMUSG00000064363 812.41 8441.24 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
9. mt-Co2 ENSMUSG00000064354 797.77 8289.12 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
10. Rpsa ENSMUSG00000032518 726.04 7543.82 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
11. mt-Co1 ENSMUSG00000064351 717.26 7452.59 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. Eef1a1 ENSMUSG00000037742 693.84 7209.25 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. mt-Co3 ENSMUSG00000064358 600.16 6235.88 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. mt-Nd5 ENSMUSG00000064367 524.77 5452.55 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
15. Tubb5 ENSMUSG00000001525 431.82 4486.77 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
16. Set ENSMUSG00000054766 371.80 3863.14 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
17. mt-Nd2 ENSMUSG00000064345 354.97 3688.27 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
18. Npm1 ENSMUSG00000057113 333.01 3460.10 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
19. Tuba1b ENSMUSG00000023004 324.23 3368.87 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Hbb-bh1 ENSMUSG00000052217 316.91 3292.81 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
21. Mdk ENSMUSG00000027239 313.25 3254.78 midkine [Source:MGI Symbol;Acc:MGI:96949]
22. mt-Rnr1 ENSMUSG00000064337 312.52 3247.20 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
23. mt-Nd3 ENSMUSG00000064360 308.13 3201.58 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
24. Hba-x ENSMUSG00000055609 307.40 3194.00 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
25. Rplp1 ENSMUSG00000007892 288.37 2996.27 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
26. Hba-a1 ENSMUSG00000069919 287.64 2988.68 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
27. Hsp90ab1 ENSMUSG00000023944 287.64 2988.68 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
28. Rpl23 ENSMUSG00000071415 274.46 2851.74 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
29. Hmga2 ENSMUSG00000056758 258.36 2684.45 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
30. Chchd2 ENSMUSG00000070493 253.24 2631.26 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Tmsb4x ENSMUSG00000049775 251.77 2615.98 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
32. Rps4x ENSMUSG00000031320 237.87 2471.56 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
33. Pkm ENSMUSG00000032294 237.14 2463.97 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Tpt1 ENSMUSG00000060126 234.21 2433.53 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Eif4g2 ENSMUSG00000005610 224.69 2334.61 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Hsp90aa1 ENSMUSG00000021270 224.69 2334.61 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
37. Tuba1a ENSMUSG00000072235 223.96 2327.03 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
38. Rpl18a ENSMUSG00000045128 218.84 2273.83 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
39. Hmgn1 ENSMUSG00000040681 216.64 2250.97 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
40. Gm13340 ENSMUSG00000083563 209.32 2174.91 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
41. Rpl4 ENSMUSG00000032399 209.32 2174.91 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Ubb ENSMUSG00000019505 204.20 2121.71 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
43. Eif5a ENSMUSG00000078812 193.95 2015.21 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
44. Rps20 ENSMUSG00000028234 182.97 1901.13 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. H19 ENSMUSG00000000031 180.05 1870.79 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
46. Eef2 ENSMUSG00000034994 169.80 1764.28 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
47. Eef1b2 ENSMUSG00000025967 166.14 1726.26 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. Ccnd2 ENSMUSG00000000184 164.68 1711.09 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
49. Serbp1 ENSMUSG00000036371 164.68 1711.09 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
50. Ybx1 ENSMUSG00000028639 163.21 1695.81 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
51. Rps26 ENSMUSG00000025362 162.48 1688.23 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Gm8292 ENSMUSG00000100215 154.43 1604.58 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
53. Rps9 ENSMUSG00000006333 154.43 1604.58 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
54. Gm5805 ENSMUSG00000061848 152.97 1589.41 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
55. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 147.84 1536.11 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
56. Fkbp1a ENSMUSG00000032966 147.11 1528.53 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Ncl ENSMUSG00000026234 144.18 1498.08 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
58. Rpl8 ENSMUSG00000003970 139.79 1452.47 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
59. Cfl1 ENSMUSG00000056201 135.40 1406.86 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
60. Rps5 ENSMUSG00000012848 135.40 1406.86 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
61. Atp5g3 ENSMUSG00000018770 132.47 1376.41 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
62. Ran ENSMUSG00000029430 131.01 1361.24 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
63. Ywhab ENSMUSG00000018326 131.01 1361.24 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
64. Hba-a2 ENSMUSG00000069917 125.89 1308.04 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
65. Tubb2b ENSMUSG00000045136 125.89 1308.04 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
66. Rps3a1 ENSMUSG00000028081 121.50 1262.43 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
67. 2810417H13Rik 120.76 1254.74 RIKEN cDNA 2810417H13 gene
68. Gm14303 ENSMUSG00000081344 120.76 1254.74 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
69. Crabp1 ENSMUSG00000032291 119.30 1239.57 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
70. Pabpc1 ENSMUSG00000022283 119.30 1239.57 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
71. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 115.64 1201.54 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
72. Zic1 ENSMUSG00000032368 114.91 1193.96 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
73. Rpl36a ENSMUSG00000079435 112.71 1171.10 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
74. Marcks ENSMUSG00000069662 111.98 1163.51 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
75. Grb10 ENSMUSG00000020176 110.52 1148.34 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
76. Pcbp1 ENSMUSG00000051695 110.52 1148.34 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
77. Hnrnpc ENSMUSG00000060373 109.78 1140.65 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
78. Nedd4 ENSMUSG00000032216 109.78 1140.65 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
79. Cdk4 ENSMUSG00000006728 108.32 1125.48 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
80. Myl6 ENSMUSG00000090841 108.32 1125.48 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
81. Btf3 ENSMUSG00000021660 106.13 1102.73 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
82. Stmn1 ENSMUSG00000028832 106.13 1102.73 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
83. Anp32b ENSMUSG00000028333 105.39 1095.04 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
84. Eef1g ENSMUSG00000071644 105.39 1095.04 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
85. Rpl32 ENSMUSG00000057841 104.66 1087.46 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
86. Calm1 ENSMUSG00000001175 103.93 1079.87 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
87. Rpl26 ENSMUSG00000060938 103.93 1079.87 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
88. Rpl41 ENSMUSG00000093674 103.93 1079.87 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
89. Ldha ENSMUSG00000063229 103.20 1072.29 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
90. Mrfap1 ENSMUSG00000055302 101.73 1057.01 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
91. Sfpq ENSMUSG00000028820 99.54 1034.26 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
92. Cadm1 ENSMUSG00000032076 98.81 1026.67 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
93. Trim28 ENSMUSG00000005566 98.81 1026.67 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
94. Hspe1 ENSMUSG00000073676 96.61 1003.81 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
95. Gm10076 ENSMUSG00000060143 95.88 996.23 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
96. Srsf3 ENSMUSG00000071172 95.88 996.23 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
97. Hnrnpa0 ENSMUSG00000007836 95.15 988.64 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
98. Lamp1 ENSMUSG00000031447 95.15 988.64 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
99. Hnrnpab ENSMUSG00000020358 92.95 965.78 heterogeneous nuclear ribonucleoprotein A/B [Source:MGI Symbol;Acc:MGI:1330294]
100. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 92.95 965.78 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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