Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s19.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4069.97 42284.35 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 2804.81 29140.16 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 1441.00 14971.06 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. Hmga2 ENSMUSG00000056758 1385.25 14391.85 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
5. mt-Cytb ENSMUSG00000064370 1097.91 11406.57 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
6. mt-Nd1 ENSMUSG00000064341 1012.13 10515.37 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. Eef1a1 ENSMUSG00000037742 827.72 8599.47 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
8. mt-Co3 ENSMUSG00000064358 707.63 7351.82 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
9. mt-Co2 ENSMUSG00000064354 664.75 6906.32 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
10. mt-Nd3 ENSMUSG00000064360 643.30 6683.47 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Nd4 ENSMUSG00000064363 621.86 6460.72 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Npm1 ENSMUSG00000057113 587.55 6104.26 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
13. Rpsa ENSMUSG00000032518 510.35 5302.21 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
14. Actb ENSMUSG00000029580 506.07 5257.74 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Set ENSMUSG00000054766 471.76 4901.28 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
16. mt-Co1 ENSMUSG00000064351 437.45 4544.82 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
17. H19 ENSMUSG00000000031 385.98 4010.08 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. Eif4g2 ENSMUSG00000005610 381.69 3965.51 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
19. Chchd2 ENSMUSG00000070493 351.67 3653.62 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
20. Tpt1 ENSMUSG00000060126 325.94 3386.31 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
21. Tubb5 ENSMUSG00000001525 321.65 3341.73 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. mt-Nd2 ENSMUSG00000064345 313.07 3252.59 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
23. Rpl23 ENSMUSG00000071415 304.50 3163.56 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
24. Gm5805 ENSMUSG00000061848 300.21 3118.99 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
25. Hsp90aa1 ENSMUSG00000021270 257.32 2673.39 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
26. Eef1b2 ENSMUSG00000025967 244.46 2539.78 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
27. Peg3 ENSMUSG00000002265 244.46 2539.78 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
28. Ddx3x ENSMUSG00000000787 240.17 2495.21 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
29. Ywhab ENSMUSG00000018326 240.17 2495.21 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
30. mt-Rnr1 ENSMUSG00000064337 240.17 2495.21 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
31. Hmgn1 ENSMUSG00000040681 235.88 2450.64 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
32. Igf2 ENSMUSG00000048583 235.88 2450.64 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
33. mt-Nd5 ENSMUSG00000064367 231.59 2406.07 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
34. Rpl4 ENSMUSG00000032399 227.30 2361.50 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Rps3a1 ENSMUSG00000028081 227.30 2361.50 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
36. Pabpc1 ENSMUSG00000022283 223.01 2316.93 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
37. Tmsb4x ENSMUSG00000049775 223.01 2316.93 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
38. Marcks ENSMUSG00000069662 210.15 2183.32 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
39. Rplp1 ENSMUSG00000007892 210.15 2183.32 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
40. Ybx1 ENSMUSG00000028639 210.15 2183.32 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
41. Tuba1b ENSMUSG00000023004 205.86 2138.75 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
42. Mdk ENSMUSG00000027239 197.28 2049.61 midkine [Source:MGI Symbol;Acc:MGI:96949]
43. Top1 ENSMUSG00000070544 197.28 2049.61 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
44. Pcbp1 ENSMUSG00000051695 192.99 2005.04 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
45. Rps4x ENSMUSG00000031320 192.99 2005.04 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
46. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 188.70 1960.47 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
47. Wbp5 188.70 1960.47 WW domain binding protein 5
48. Hbb-y ENSMUSG00000052187 184.41 1915.90 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
49. Hsp90ab1 ENSMUSG00000023944 175.84 1826.86 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
50. Ccnd2 ENSMUSG00000000184 171.55 1782.29 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
51. Csde1 ENSMUSG00000068823 158.68 1648.58 cold shock domain containing E1, RNA binding [Source:MGI Symbol;Acc:MGI:92356]
52. Srsf3 ENSMUSG00000071172 158.68 1648.58 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
53. Rpl32 ENSMUSG00000057841 154.39 1604.01 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
54. Rps20 ENSMUSG00000028234 154.39 1604.01 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
55. H3f3b ENSMUSG00000016559 150.10 1559.44 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
56. Hspa5 ENSMUSG00000026864 150.10 1559.44 heat shock protein 5 [Source:MGI Symbol;Acc:MGI:95835]
57. Ubb ENSMUSG00000019505 150.10 1559.44 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
58. Hspe1 ENSMUSG00000073676 145.82 1514.98 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
59. Rpl18a ENSMUSG00000045128 145.82 1514.98 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
60. Nedd4 ENSMUSG00000032216 141.53 1470.40 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
61. Serbp1 ENSMUSG00000036371 141.53 1470.40 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
62. Srsf1 ENSMUSG00000018379, ENSMUSG00000098301 141.53 1470.40 serine/arginine-rich splicing factor 1 [Source:MGI Symbol;Acc:MGI:98283]
63. Atp5g3 ENSMUSG00000018770 137.24 1425.83 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
64. Eef2 ENSMUSG00000034994 137.24 1425.83 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
65. Prdx1 ENSMUSG00000028691 132.95 1381.26 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
66. Rpl36a ENSMUSG00000079435 132.95 1381.26 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
67. Rps5 ENSMUSG00000012848 132.95 1381.26 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
68. Morf4l2 ENSMUSG00000031422 128.66 1336.69 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
69. Pbrm1 ENSMUSG00000042323 128.66 1336.69 polybromo 1 [Source:MGI Symbol;Acc:MGI:1923998]
70. Pkm ENSMUSG00000032294 128.66 1336.69 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
71. Fstl1 ENSMUSG00000022816 124.37 1292.12 follistatin-like 1 [Source:MGI Symbol;Acc:MGI:102793]
72. Mapre1 ENSMUSG00000027479 124.37 1292.12 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
73. Rpl8 ENSMUSG00000003970 124.37 1292.12 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
74. Rps14 ENSMUSG00000024608 124.37 1292.12 ribosomal protein S14 [Source:MGI Symbol;Acc:MGI:98107]
75. Rps26 ENSMUSG00000025362 124.37 1292.12 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
76. Hnrnpa0 ENSMUSG00000007836 120.08 1247.55 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
77. 2810417H13Rik 115.79 1202.98 RIKEN cDNA 2810417H13 gene
78. Rpl13a ENSMUSG00000074129 115.79 1202.98 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
79. Rpl41 ENSMUSG00000093674 115.79 1202.98 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
80. Tcf4 ENSMUSG00000053477 115.79 1202.98 transcription factor 4 [Source:MGI Symbol;Acc:MGI:98506]
81. Caprin1 ENSMUSG00000027184 111.51 1158.52 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
82. Gm8292 ENSMUSG00000100215 111.51 1158.52 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
83. Grb10 ENSMUSG00000020176 111.51 1158.52 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
84. Ran ENSMUSG00000029430 111.51 1158.52 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
85. Rpl21 ENSMUSG00000041453 111.51 1158.52 ribosomal protein L21 [Source:MGI Symbol;Acc:MGI:1278340]
86. Rpl26 ENSMUSG00000060938 111.51 1158.52 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
87. Rpl39-ps ENSMUSG00000036305 111.51 1158.52 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
88. Dnaja2 ENSMUSG00000031701 107.22 1113.95 DnaJ heat shock protein family (Hsp40) member A2 [Source:MGI Symbol;Acc:MGI:1931882]
89. Hnrnpa1 ENSMUSG00000046434 107.22 1113.95 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
90. Hnrnpk ENSMUSG00000021546 107.22 1113.95 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
91. Hoxc8 ENSMUSG00000001657 107.22 1113.95 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
92. Hsph1 ENSMUSG00000029657 107.22 1113.95 heat shock 105kDa/110kDa protein 1 [Source:MGI Symbol;Acc:MGI:105053]
93. Rpl13 ENSMUSG00000000740 107.22 1113.95 ribosomal protein L13 [Source:MGI Symbol;Acc:MGI:105922]
94. Rrm2 ENSMUSG00000020649 107.22 1113.95 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
95. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 107.22 1113.95 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
96. Tuba1a ENSMUSG00000072235 107.22 1113.95 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
97. Foxp2 ENSMUSG00000029563 102.93 1069.38 forkhead box P2 [Source:MGI Symbol;Acc:MGI:2148705]
98. Sfpq ENSMUSG00000028820 102.93 1069.38 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
99. Tmpo ENSMUSG00000019961 102.93 1069.38 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
100. Top2a ENSMUSG00000020914 102.93 1069.38 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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