Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s18.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2375.05 24674.89 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 1886.05 19594.57 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 1833.93 19053.08 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1660.19 17248.06 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co1 ENSMUSG00000064351 1117.61 11611.08 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
6. mt-Nd4 ENSMUSG00000064363 1062.55 11039.05 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Rnr2 ENSMUSG00000064339 1060.04 11012.98 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co2 ENSMUSG00000064354 932.56 9688.56 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. H19 ENSMUSG00000000031 897.39 9323.17 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Eef1a1 ENSMUSG00000037742 744.58 7735.60 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. Actb ENSMUSG00000029580 721.35 7494.26 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Co3 ENSMUSG00000064358 585.70 6084.96 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Igf2 ENSMUSG00000048583 557.86 5795.72 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Rpsa ENSMUSG00000032518 530.23 5508.67 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Tubb5 ENSMUSG00000001525 459.69 4775.82 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
16. mt-Nd3 ENSMUSG00000064360 420.54 4369.08 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
17. Npm1 ENSMUSG00000057113 399.82 4153.81 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
18. Mdk ENSMUSG00000027239 367.79 3821.05 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Tuba1b ENSMUSG00000023004 363.19 3773.26 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. mt-Nd5 ENSMUSG00000064367 360.05 3740.63 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. mt-Nd2 ENSMUSG00000064345 339.53 3527.45 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
22. Hmga2 ENSMUSG00000056758 316.71 3290.37 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Rpl23 ENSMUSG00000071415 312.32 3244.76 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
24. Set ENSMUSG00000054766 309.81 3218.68 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
25. Rpl4 ENSMUSG00000032399 294.32 3057.75 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
26. Hmgn1 ENSMUSG00000040681 271.29 2818.49 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
27. Gm13340 ENSMUSG00000083563 266.06 2764.15 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
28. Pkm ENSMUSG00000032294 264.38 2746.70 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Hbb-y ENSMUSG00000052187 263.96 2742.34 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
30. Hsp90ab1 ENSMUSG00000023944 248.89 2585.77 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Chchd2 ENSMUSG00000070493 236.54 2457.46 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
32. Rpl18a ENSMUSG00000045128 235.29 2444.48 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
33. Ubb ENSMUSG00000019505 233.19 2422.66 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Tpt1 ENSMUSG00000060126 230.26 2392.22 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Rps4x ENSMUSG00000031320 228.38 2372.69 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
36. Eif4g2 ENSMUSG00000005610 205.14 2131.24 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Eef1b2 ENSMUSG00000025967 203.05 2109.53 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
38. Rplp1 ENSMUSG00000007892 191.75 1992.13 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
39. Hsp90aa1 ENSMUSG00000021270 190.49 1979.04 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
40. Ywhab ENSMUSG00000018326 173.12 1798.58 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
41. Eif5a ENSMUSG00000078812 167.88 1744.14 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. Rps9 ENSMUSG00000006333 167.25 1737.60 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
43. Cdkn1c ENSMUSG00000037664 165.16 1715.88 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
44. Atp5g3 ENSMUSG00000018770 163.28 1696.35 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Ncl ENSMUSG00000026234 162.86 1691.99 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
46. Ccnd2 ENSMUSG00000000184 161.81 1681.08 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
47. Serbp1 ENSMUSG00000036371 161.60 1678.90 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
48. Rps20 ENSMUSG00000028234 159.09 1652.82 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Peg3 ENSMUSG00000002265 157.83 1639.73 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
50. Nedd4 ENSMUSG00000032216 153.44 1594.12 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
51. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 151.34 1572.30 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
52. Ybx1 ENSMUSG00000028639 151.34 1572.30 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
53. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 147.16 1528.88 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
54. Hnrnpc ENSMUSG00000060373 145.69 1513.60 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
55. Tuba1a ENSMUSG00000072235 145.48 1511.42 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
56. Gm5805 ENSMUSG00000061848 137.32 1426.65 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
57. Pabpc1 ENSMUSG00000022283 136.90 1422.28 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
58. Gm8292 ENSMUSG00000100215 136.48 1417.92 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
59. Eef2 ENSMUSG00000034994 135.23 1404.93 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
60. Grb10 ENSMUSG00000020176 132.30 1374.49 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
61. Fkbp1a ENSMUSG00000032966 130.83 1359.22 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
62. Rpl8 ENSMUSG00000003970 130.83 1359.22 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
63. Son ENSMUSG00000022961 129.78 1348.31 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
64. Rps3a1 ENSMUSG00000028081 128.53 1335.33 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
65. Rps26 ENSMUSG00000025362 127.69 1326.60 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
66. Pcbp1 ENSMUSG00000051695 121.83 1265.72 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
67. Ran ENSMUSG00000029430 120.99 1256.99 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
68. Myl6 ENSMUSG00000090841 120.78 1254.81 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
69. Tmsb4x ENSMUSG00000049775 119.74 1244.00 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
70. 2810417H13Rik 118.48 1230.91 RIKEN cDNA 2810417H13 gene
71. Rps5 ENSMUSG00000012848 118.48 1230.91 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
72. Trim28 ENSMUSG00000005566 117.43 1220.00 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
73. Rrm2 ENSMUSG00000020649 115.34 1198.29 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
74. mt-Rnr1 ENSMUSG00000064337 114.92 1193.93 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
75. Cfl1 ENSMUSG00000056201 114.50 1189.56 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
76. Btf3 ENSMUSG00000021660 113.04 1174.40 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
77. Cdk4 ENSMUSG00000006728 112.20 1165.67 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
78. Eef1g ENSMUSG00000071644 110.94 1152.58 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
79. Meg3 ENSMUSG00000021268 109.06 1133.05 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
80. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 108.64 1128.68 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
81. Hnrnpk ENSMUSG00000021546 108.43 1126.50 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
82. Pbx1 ENSMUSG00000052534 108.22 1124.32 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
83. Ddx5 ENSMUSG00000020719 107.80 1119.96 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
84. Fkbp4 ENSMUSG00000030357 107.80 1119.96 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
85. H3f3b ENSMUSG00000016559 106.97 1111.33 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
86. Mrfap1 ENSMUSG00000055302 104.25 1083.08 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
87. Scd2 ENSMUSG00000025203 101.52 1054.71 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
88. Srsf3 ENSMUSG00000071172 99.85 1037.36 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
89. Gm14586 ENSMUSG00000083621 98.38 1022.09 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
90. Erh ENSMUSG00000021131 97.13 1009.10 ERH mRNA splicing and mitosis factor [Source:MGI Symbol;Acc:MGI:108089]
91. Nasp ENSMUSG00000028693 96.08 998.20 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
92. Gm5963 ENSMUSG00000052192 95.87 996.01 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
93. Anp32b ENSMUSG00000028333 95.66 993.83 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
94. Hspe1 ENSMUSG00000073676 94.41 980.85 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
95. Paics ENSMUSG00000029247 94.41 980.85 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
96. Stmn1 ENSMUSG00000028832 92.94 965.57 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
97. Prdx1 ENSMUSG00000028691 91.27 948.22 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
98. Lamp1 ENSMUSG00000031447 90.43 939.50 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
99. Ldha ENSMUSG00000063229 90.43 939.50 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
100. Rpl32 ENSMUSG00000057841 89.80 932.95 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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