Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s17.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 3468.49 36036.69 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 2075.24 21561.19 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Cytb ENSMUSG00000064370 1737.01 18047.07 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Atp6 ENSMUSG00000064357 1721.55 17886.45 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd4 ENSMUSG00000064363 1396.84 14512.80 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Nd1 ENSMUSG00000064341 1395.18 14495.55 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1084.56 11268.29 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Co2 ENSMUSG00000064354 908.95 9443.75 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. Actb ENSMUSG00000029580 855.11 8884.37 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. Eef1a1 ENSMUSG00000037742 764.27 7940.56 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. mt-Co3 ENSMUSG00000064358 717.89 7458.69 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. H19 ENSMUSG00000000031 618.49 6425.95 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Rpsa ENSMUSG00000032518 534.82 5556.64 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
14. mt-Nd5 ENSMUSG00000064367 517.43 5375.96 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
15. Tubb5 ENSMUSG00000001525 513.01 5330.04 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
16. mt-Nd2 ENSMUSG00000064345 483.47 5023.12 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. mt-Nd3 ENSMUSG00000064360 427.97 4446.49 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
18. Tuba1b ENSMUSG00000023004 418.58 4348.94 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
19. Igf2 ENSMUSG00000048583 403.67 4194.02 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
20. Hmga2 ENSMUSG00000056758 393.46 4087.94 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Npm1 ENSMUSG00000057113 389.87 4050.65 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Set ENSMUSG00000054766 366.67 3809.60 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
23. Mdk ENSMUSG00000027239 363.64 3778.12 midkine [Source:MGI Symbol;Acc:MGI:96949]
24. Gm13340 ENSMUSG00000083563 343.48 3568.67 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
25. Rpl23 ENSMUSG00000071415 329.12 3419.47 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
26. Hbb-y ENSMUSG00000052187 299.03 3106.84 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
27. Rpl4 ENSMUSG00000032399 287.71 2989.23 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
28. Tpt1 ENSMUSG00000060126 263.41 2736.76 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Chchd2 ENSMUSG00000070493 260.10 2702.37 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
30. Hmgn1 ENSMUSG00000040681 243.81 2533.12 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
31. Eif4g2 ENSMUSG00000005610 240.77 2501.54 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Rps4x ENSMUSG00000031320 233.04 2421.22 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
33. Hsp90ab1 ENSMUSG00000023944 223.10 2317.95 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Ubb ENSMUSG00000019505 219.23 2277.74 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Pkm ENSMUSG00000032294 216.19 2246.16 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
36. Hsp90aa1 ENSMUSG00000021270 196.87 2045.43 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
37. Rpl18a ENSMUSG00000045128 192.72 2002.31 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
38. Eef1b2 ENSMUSG00000025967 192.45 1999.50 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
39. Rps5 ENSMUSG00000012848 172.57 1792.96 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
40. Rps20 ENSMUSG00000028234 170.36 1770.00 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Ybx1 ENSMUSG00000028639 166.49 1729.79 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
42. Rplp1 ENSMUSG00000007892 161.80 1681.06 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
43. Ncl ENSMUSG00000026234 155.73 1617.99 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
44. Rps9 ENSMUSG00000006333 155.17 1612.18 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
45. Eif5a ENSMUSG00000078812 154.62 1606.46 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
46. Rps3a1 ENSMUSG00000028081 154.07 1600.75 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
47. Eef2 ENSMUSG00000034994 152.41 1583.50 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
48. Ccnd2 ENSMUSG00000000184 146.06 1517.52 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
49. Tmsb4x ENSMUSG00000049775 143.30 1488.85 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
50. Gm8292 ENSMUSG00000100215 141.09 1465.89 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
51. Serbp1 ENSMUSG00000036371 141.09 1465.89 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
52. Atp5g3 ENSMUSG00000018770 139.16 1445.84 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
53. Rps26 ENSMUSG00000025362 138.33 1437.21 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
54. Ywhab ENSMUSG00000018326 136.67 1419.97 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
55. Fkbp1a ENSMUSG00000032966 135.02 1402.82 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
56. Nedd4 ENSMUSG00000032216 134.74 1399.91 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
57. Cdkn1c ENSMUSG00000037664 132.53 1376.95 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
58. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 129.77 1348.28 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
59. Pabpc1 ENSMUSG00000022283 129.50 1345.47 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
60. Hspe1 ENSMUSG00000073676 129.22 1342.56 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
61. Pcbp1 ENSMUSG00000051695 127.56 1325.31 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
62. Son ENSMUSG00000022961 127.29 1322.51 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
63. Tuba1a ENSMUSG00000072235 127.01 1319.60 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
64. Peg3 ENSMUSG00000002265 124.80 1296.64 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
65. mt-Rnr1 ENSMUSG00000064337 124.53 1293.83 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
66. Gm5805 ENSMUSG00000061848 123.42 1282.30 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
67. Hnrnpc ENSMUSG00000060373 121.49 1262.25 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
68. 2810417H13Rik 121.21 1259.34 RIKEN cDNA 2810417H13 gene
69. Rpl8 ENSMUSG00000003970 117.62 1222.04 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
70. Ran ENSMUSG00000029430 117.35 1219.24 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
71. Eef1g ENSMUSG00000071644 115.14 1196.27 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
72. Srsf3 ENSMUSG00000071172 111.82 1161.78 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
73. Myl6 ENSMUSG00000090841 109.89 1141.73 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
74. Marcks ENSMUSG00000069662 104.92 1090.09 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
75. Cfl1 ENSMUSG00000056201 104.65 1087.29 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
76. Cdk4 ENSMUSG00000006728 103.82 1078.66 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
77. Gnb2l1 Gnb2l1 102.99 1070.04
78. Trim28 ENSMUSG00000005566 102.71 1067.13 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
79. H3f3b ENSMUSG00000016559 100.50 1044.17 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
80. Grb10 ENSMUSG00000020176 100.23 1041.36 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
81. Wbp5 100.23 1041.36 WW domain binding protein 5
82. Hba-a1 ENSMUSG00000069919 98.85 1027.03 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
83. Mrfap1 ENSMUSG00000055302 98.02 1018.40 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
84. Cd24a ENSMUSG00000047139 97.74 1015.49 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
85. Rpl32 ENSMUSG00000057841 97.74 1015.49 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
86. Rpl26 ENSMUSG00000060938 96.91 1006.87 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
87. Hnrnpk ENSMUSG00000021546 96.64 1004.06 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
88. Rpl36a ENSMUSG00000079435 96.36 1001.15 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
89. Ldha ENSMUSG00000063229 93.33 969.67 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
90. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 92.50 961.05 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
91. Sfpq ENSMUSG00000028820 91.39 949.52 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
92. Gm17132 ENSMUSG00000061331 89.74 932.37 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
93. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 89.74 932.37 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
94. Fkbp4 ENSMUSG00000030357 88.91 923.75 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
95. Nasp ENSMUSG00000028693 88.91 923.75 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
96. Rpl21 ENSMUSG00000041453 88.63 920.84 ribosomal protein L21 [Source:MGI Symbol;Acc:MGI:1278340]
97. Anp32b ENSMUSG00000028333 87.80 912.22 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
98. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 87.53 909.41 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
99. Calm1 ENSMUSG00000001175 86.70 900.79 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
100. Malat1 ENSMUSG00000092341 86.70 900.79 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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