Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s16.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2221.66 23084.61 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 1683.03 17487.87 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 1549.80 16103.51 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1318.43 13699.42 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1218.46 12660.66 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co1 ENSMUSG00000064351 1005.86 10451.59 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
7. mt-Rnr2 ENSMUSG00000064339 940.98 9777.44 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co2 ENSMUSG00000064354 804.89 8363.37 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. Eef1a1 ENSMUSG00000037742 750.01 7793.13 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
10. Actb ENSMUSG00000029580 733.28 7619.30 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. H19 ENSMUSG00000000031 712.87 7407.22 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. mt-Co3 ENSMUSG00000064358 570.26 5925.40 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Tubb5 ENSMUSG00000001525 535.57 5564.95 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
14. Rpsa ENSMUSG00000032518 494.77 5141.01 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Mdk ENSMUSG00000027239 419.07 4354.43 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Tuba1b ENSMUSG00000023004 401.32 4170.00 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
17. Igf2 ENSMUSG00000048583 399.89 4155.14 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Npm1 ENSMUSG00000057113 382.35 3972.89 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
19. mt-Nd3 ENSMUSG00000064360 375.41 3900.77 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
20. Set ENSMUSG00000054766 357.05 3710.00 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
21. mt-Nd2 ENSMUSG00000064345 314.61 3269.02 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
22. Gm13340 ENSMUSG00000083563 300.74 3124.90 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
23. Hbb-y ENSMUSG00000052187 292.98 3044.27 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
24. Rpl23 ENSMUSG00000071415 292.78 3042.19 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
25. Rpl4 ENSMUSG00000032399 284.41 2955.22 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
26. Hmga2 ENSMUSG00000056758 274.42 2851.42 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
27. Hmgn1 ENSMUSG00000040681 250.55 2603.39 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
28. Hsp90ab1 ENSMUSG00000023944 247.08 2567.34 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Tpt1 ENSMUSG00000060126 241.37 2508.00 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Chchd2 ENSMUSG00000070493 234.43 2435.89 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Ubb ENSMUSG00000019505 227.90 2368.04 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. mt-Nd5 ENSMUSG00000064367 215.45 2238.68 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
33. Eif4g2 ENSMUSG00000005610 203.82 2117.83 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Rps4x ENSMUSG00000031320 203.62 2115.76 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
35. Pkm ENSMUSG00000032294 200.15 2079.70 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
36. Eef1b2 ENSMUSG00000025967 187.91 1952.52 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
37. Rpl18a ENSMUSG00000045128 184.03 1912.20 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
38. Ccnd2 ENSMUSG00000000184 178.32 1852.87 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
39. Rps20 ENSMUSG00000028234 168.94 1755.41 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Hsp90aa1 ENSMUSG00000021270 165.67 1721.43 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Eif5a ENSMUSG00000078812 163.83 1702.31 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. Atp5g3 ENSMUSG00000018770 162.81 1691.71 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
43. Cdkn1c ENSMUSG00000037664 158.73 1649.32 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
44. Eef2 ENSMUSG00000034994 157.10 1632.38 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
45. Rps9 ENSMUSG00000006333 155.88 1619.70 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
46. Ybx1 ENSMUSG00000028639 153.84 1598.51 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
47. Ncl ENSMUSG00000026234 150.57 1564.53 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
48. Serbp1 ENSMUSG00000036371 149.14 1549.67 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
49. Tmsb4x ENSMUSG00000049775 148.53 1543.33 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
50. Fkbp1a ENSMUSG00000032966 146.70 1524.32 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
51. Rpl14-ps1 ENSMUSG00000046721 142.82 1484.00 ribosomal protein L14, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3710579]
52. Rplp1 ENSMUSG00000007892 142.82 1484.00 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
53. Gm8292 ENSMUSG00000100215 141.60 1471.32 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
54. Tuba1a ENSMUSG00000072235 140.58 1460.73 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
55. Ywhab ENSMUSG00000018326 140.17 1456.46 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
56. Nedd4 ENSMUSG00000032216 135.07 1403.47 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
57. Rpl8 ENSMUSG00000003970 132.41 1375.83 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
58. Rps3a1 ENSMUSG00000028081 132.41 1375.83 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
59. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 132.21 1373.75 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
60. Son ENSMUSG00000022961 131.80 1369.49 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
61. Rps26 ENSMUSG00000025362 130.78 1358.90 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
62. Rps5 ENSMUSG00000012848 130.37 1354.64 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
63. Gm5805 ENSMUSG00000061848 124.05 1288.97 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
64. Pabpc1 ENSMUSG00000022283 123.84 1286.78 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
65. Pcbp1 ENSMUSG00000051695 122.21 1269.85 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
66. Grb10 ENSMUSG00000020176 121.60 1263.51 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
67. Ran ENSMUSG00000029430 120.99 1257.17 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
68. Meg3 ENSMUSG00000021268 120.58 1252.91 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
69. Peg3 ENSMUSG00000002265 120.17 1248.65 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
70. Eef1g ENSMUSG00000071644 119.15 1238.05 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
71. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 118.74 1233.79 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
72. Hnrnpc ENSMUSG00000060373 117.32 1219.04 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
73. Mrfap1 ENSMUSG00000055302 114.66 1191.40 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
74. Ddx5 ENSMUSG00000020719 113.64 1180.80 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
75. Myl6 ENSMUSG00000090841 111.81 1161.78 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
76. Hba-x ENSMUSG00000055609 111.20 1155.45 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
77. H3f3b ENSMUSG00000016559 107.73 1119.39 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
78. Cfl1 ENSMUSG00000056201 106.91 1110.87 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
79. Rrm2 ENSMUSG00000020649 105.07 1091.75 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
80. Hnrnpk ENSMUSG00000021546 104.05 1081.15 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
81. Btf3 ENSMUSG00000021660 103.65 1077.00 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
82. Hspe1 ENSMUSG00000073676 103.65 1077.00 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
83. Trim28 ENSMUSG00000005566 103.65 1077.00 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
84. Fkbp4 ENSMUSG00000030357 102.42 1064.22 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
85. 2810417H13Rik 99.97 1038.76 RIKEN cDNA 2810417H13 gene
86. Cdk4 ENSMUSG00000006728 99.97 1038.76 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
87. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 97.12 1009.15 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
88. Gm5963 ENSMUSG00000052192 94.46 981.51 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
89. Srsf3 ENSMUSG00000071172 94.46 981.51 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
90. Scd2 ENSMUSG00000025203 94.06 977.35 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
91. Hnrnpa0 ENSMUSG00000007836 93.65 973.09 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
92. Marcks ENSMUSG00000069662 93.44 970.91 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
93. Nasp ENSMUSG00000028693 92.22 958.23 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
94. Stmn1 ENSMUSG00000028832 91.40 949.71 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
95. Hnrnpa2b1 ENSMUSG00000004980 90.38 939.11 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
96. Paics ENSMUSG00000029247 89.57 930.70 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
97. Banf1 ENSMUSG00000024844 89.36 928.51 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
98. Rpl26 ENSMUSG00000060938 88.34 917.91 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
99. Rpl41 ENSMUSG00000093674 88.14 915.84 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
100. Sfpq ENSMUSG00000028820 87.73 911.58 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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