Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s13.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4903.89 50947.19 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 3280.81 34084.79 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. Eef1a1 ENSMUSG00000037742 1014.43 10539.05 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
4. Rpsa ENSMUSG00000032518 875.87 9099.53 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
5. mt-Cytb ENSMUSG00000064370 821.44 8534.05 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
6. Actb ENSMUSG00000029580 801.65 8328.45 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
7. mt-Nd1 ENSMUSG00000064341 771.95 8019.90 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Atp6 ENSMUSG00000064357 747.21 7762.87 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
9. mt-Co2 ENSMUSG00000064354 668.04 6940.36 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
10. Chchd2 ENSMUSG00000070493 549.28 5706.55 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
11. mt-Nd5 ENSMUSG00000064367 504.74 5243.81 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Co3 ENSMUSG00000064358 499.79 5192.39 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. mt-Nd4 ENSMUSG00000064363 484.95 5038.21 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
14. Tpt1 ENSMUSG00000060126 460.20 4781.08 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
15. Tmsb4x ENSMUSG00000049775 450.31 4678.33 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
16. Rplp1 ENSMUSG00000007892 435.46 4524.05 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
17. Tubb5 ENSMUSG00000001525 405.77 4215.60 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
18. Rps9 ENSMUSG00000006333 395.87 4112.75 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
19. Npm1 ENSMUSG00000057113 390.93 4061.43 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Tuba1a ENSMUSG00000072235 385.98 4010.00 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
21. mt-Rnr1 ENSMUSG00000064337 385.98 4010.00 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
22. Rpl18a ENSMUSG00000045128 371.13 3855.72 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
23. Tuba1b ENSMUSG00000023004 371.13 3855.72 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Eef1b2 ENSMUSG00000025967 361.24 3752.97 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
25. mt-Nd3 ENSMUSG00000064360 361.24 3752.97 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
26. Hbb-y ENSMUSG00000052187 341.44 3547.27 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
27. Gm5805 ENSMUSG00000061848 336.49 3495.84 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
28. Rpl23 ENSMUSG00000071415 331.54 3444.42 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
29. Gm8292 ENSMUSG00000100215 316.70 3290.24 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
30. Rps4x ENSMUSG00000031320 306.80 3187.39 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
31. Rps20 ENSMUSG00000028234 301.85 3135.96 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
32. Hbb-bh1 ENSMUSG00000052217 287.01 2981.79 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
33. mt-Co1 ENSMUSG00000064351 287.01 2981.79 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
34. Hmga2 ENSMUSG00000056758 277.11 2878.93 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
35. Rps26 ENSMUSG00000025362 277.11 2878.93 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
36. H19 ENSMUSG00000000031 272.16 2827.51 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
37. Hmgn1 ENSMUSG00000040681 267.22 2776.19 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
38. Rpl4 ENSMUSG00000032399 257.32 2673.33 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
39. Gm10076 ENSMUSG00000060143 252.37 2621.91 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
40. Pkm ENSMUSG00000032294 252.37 2621.91 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
41. Mdk ENSMUSG00000027239 242.47 2519.05 midkine [Source:MGI Symbol;Acc:MGI:96949]
42. Rpl32 ENSMUSG00000057841 237.52 2467.63 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
43. Rps5 ENSMUSG00000012848 232.58 2416.31 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
44. Eif4g2 ENSMUSG00000005610 227.63 2364.88 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Rpl8 ENSMUSG00000003970 227.63 2364.88 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
46. Rps3a1 ENSMUSG00000028081 227.63 2364.88 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
47. Rps14 ENSMUSG00000024608 222.68 2313.45 ribosomal protein S14 [Source:MGI Symbol;Acc:MGI:98107]
48. Myl6 ENSMUSG00000090841 217.73 2262.03 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
49. Eef2 ENSMUSG00000034994 212.78 2210.60 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
50. mt-Nd2 ENSMUSG00000064345 212.78 2210.60 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
51. Set ENSMUSG00000054766 207.83 2159.17 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
52. Ubb ENSMUSG00000019505 207.83 2159.17 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
53. Atp5g3 ENSMUSG00000018770 202.89 2107.85 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
54. Rpl41 ENSMUSG00000093674 202.89 2107.85 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
55. Ybx1 ENSMUSG00000028639 192.99 2005.00 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
56. Eif5a ENSMUSG00000078812 183.09 1902.15 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
57. Tubb2b ENSMUSG00000045136 183.09 1902.15 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
58. Erh ENSMUSG00000021131 173.19 1799.29 ERH mRNA splicing and mitosis factor [Source:MGI Symbol;Acc:MGI:108089]
59. Hsp90aa1 ENSMUSG00000021270 168.25 1747.97 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
60. Rpl36a ENSMUSG00000079435 168.25 1747.97 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
61. Prdx1 ENSMUSG00000028691 163.30 1696.55 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
62. Gm14586 ENSMUSG00000083621 158.35 1645.12 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
63. Hsp90ab1 ENSMUSG00000023944 158.35 1645.12 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
64. Srsf3 ENSMUSG00000071172 158.35 1645.12 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
65. Rpl36a-ps1 ENSMUSG00000060377 153.40 1593.69 ribosomal protein L36A, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3642585]
66. Ran ENSMUSG00000029430 148.45 1542.27 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
67. Btf3 ENSMUSG00000021660 143.50 1490.84 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
68. Eef1g ENSMUSG00000071644 143.50 1490.84 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
69. Rpl39-ps ENSMUSG00000036305 143.50 1490.84 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
70. Stmn1 ENSMUSG00000028832 143.50 1490.84 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
71. Rpl37 ENSMUSG00000041841 138.56 1439.52 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
72. Atp5a1 ENSMUSG00000025428, ENSMUSG00000116276 133.61 1388.09 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 [Source:MGI Symbol;Acc:MGI:88115]
73. Banf1 ENSMUSG00000024844 133.61 1388.09 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
74. Ddx3x ENSMUSG00000000787 133.61 1388.09 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
75. Hnrnpc ENSMUSG00000060373 133.61 1388.09 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
76. Hspe1 ENSMUSG00000073676 133.61 1388.09 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
77. Ndufa12 ENSMUSG00000020022 133.61 1388.09 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
78. Ndufa4 ENSMUSG00000029632 133.61 1388.09 Ndufa4, mitochondrial complex associated [Source:MGI Symbol;Acc:MGI:107686]
79. Cadm1 ENSMUSG00000032076 123.71 1285.24 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
80. Csde1 ENSMUSG00000068823 123.71 1285.24 cold shock domain containing E1, RNA binding [Source:MGI Symbol;Acc:MGI:92356]
81. Gm14303 ENSMUSG00000081344 123.71 1285.24 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
82. Gm2000 ENSMUSG00000078193 123.71 1285.24 predicted gene 2000 [Source:MGI Symbol;Acc:MGI:3780170]
83. Gm5963 ENSMUSG00000052192 123.71 1285.24 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
84. Malat1 ENSMUSG00000092341 123.71 1285.24 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
85. Morf4l2 ENSMUSG00000031422 123.71 1285.24 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
86. Ncl ENSMUSG00000026234 123.71 1285.24 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
87. Pabpc1 ENSMUSG00000022283 123.71 1285.24 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
88. Rpl26 ENSMUSG00000060938 123.71 1285.24 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
89. Serbp1 ENSMUSG00000036371 123.71 1285.24 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
90. Calm1 ENSMUSG00000001175 118.76 1233.81 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
91. Cox8a ENSMUSG00000035885 118.76 1233.81 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
92. Fkbp1a ENSMUSG00000032966 118.76 1233.81 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
93. Ldha ENSMUSG00000063229 118.76 1233.81 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
94. Ndufc2 ENSMUSG00000030647 118.76 1233.81 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
95. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 118.76 1233.81 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
96. Rpl34 ENSMUSG00000062006 118.76 1233.81 ribosomal protein L34 [Source:MGI Symbol;Acc:MGI:1915686]
97. Ywhab ENSMUSG00000018326 118.76 1233.81 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
98. Cdkn1c ENSMUSG00000037664 113.81 1182.39 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
99. Hint1 ENSMUSG00000020267 113.81 1182.39 histidine triad nucleotide binding protein 1 [Source:MGI Symbol;Acc:MGI:1321133]
100. Rpl14-ps1 ENSMUSG00000046721 113.81 1182.39 ribosomal protein L14, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3710579]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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