Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s9.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3673.96 38172.14 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3535.34 36731.89 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2206.97 22930.24 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2182.04 22671.22 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1699.36 17656.21 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1670.43 17355.63 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Rnr2 ENSMUSG00000064339 1456.02 15127.93 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1039.16 10796.79 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 882.59 9170.04 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Hbb-y ENSMUSG00000052187 817.76 8496.46 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. Eef1a1 ENSMUSG00000037742 674.16 7004.47 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. Rpsa ENSMUSG00000032518 525.56 5460.53 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
13. mt-Nd3 ENSMUSG00000064360 520.58 5408.78 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Actb ENSMUSG00000029580 516.59 5367.33 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Nd5 ENSMUSG00000064367 457.75 4755.98 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
16. mt-Rnr1 ENSMUSG00000064337 441.79 4590.16 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
17. Mdk ENSMUSG00000027239 432.82 4496.96 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. mt-Co3 ENSMUSG00000064358 379.96 3947.75 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Set ENSMUSG00000054766 352.04 3657.67 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
20. Npm1 ENSMUSG00000057113 333.09 3460.78 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. H19 ENSMUSG00000000031 330.10 3429.71 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
22. Gm13340 ENSMUSG00000083563 323.12 3357.19 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
23. Pkm ENSMUSG00000032294 304.17 3160.30 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Tuba1b ENSMUSG00000023004 300.18 3118.85 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Cfl1 ENSMUSG00000056201 281.23 2921.96 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Rps26 ENSMUSG00000025362 253.31 2631.87 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
27. Rpl18a ENSMUSG00000045128 250.32 2600.80 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
28. Ybx1 ENSMUSG00000028639 244.33 2538.57 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
29. Hba-x ENSMUSG00000055609 240.34 2497.11 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
30. Hbb-bh1 ENSMUSG00000052217 238.35 2476.44 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
31. U2af2 ENSMUSG00000030435 226.38 2352.07 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
32. Hmga2 ENSMUSG00000056758 225.38 2341.68 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
33. Rpl4 ENSMUSG00000032399 224.39 2331.39 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Eif5a ENSMUSG00000078812 223.39 2321.00 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Hnrnpc ENSMUSG00000060373 222.39 2310.61 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
36. Hba-a1 ENSMUSG00000069919 219.40 2279.55 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
37. Hsp90ab1 ENSMUSG00000023944 215.41 2238.09 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Rrm2 ENSMUSG00000020649 214.41 2227.70 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
39. Gm10800 ENSMUSG00000075014 211.42 2196.64 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
40. Tmsb4x ENSMUSG00000049775 207.43 2155.18 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
41. Ubb ENSMUSG00000019505 204.44 2124.11 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
42. Tubb5 ENSMUSG00000001525 203.44 2113.72 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
43. Rplp1 ENSMUSG00000007892 199.45 2072.27 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
44. Tpt1 ENSMUSG00000060126 196.46 2041.20 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
45. Atp5g3 ENSMUSG00000018770 195.47 2030.92 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
46. Eif4g2 ENSMUSG00000005610 193.47 2010.14 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
47. Gm26917 ENSMUSG00000097971 192.47 1999.75 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
48. Chchd2 ENSMUSG00000070493 189.48 1968.68 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
49. Rpl37 ENSMUSG00000041841 178.51 1854.70 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
50. Hsp90aa1 ENSMUSG00000021270 177.51 1844.31 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. Pabpc1 ENSMUSG00000022283 173.53 1802.96 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
52. Rps20 ENSMUSG00000028234 171.53 1782.18 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
53. Ran ENSMUSG00000029430 165.55 1720.05 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
54. Rps5 ENSMUSG00000012848 165.55 1720.05 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
55. Ldha ENSMUSG00000063229 162.56 1688.99 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
56. Banf1 ENSMUSG00000024844 158.57 1647.53 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
57. Tubb2b ENSMUSG00000045136 158.57 1647.53 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
58. Rpl23 ENSMUSG00000071415 152.58 1585.29 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
59. Eef1b2 ENSMUSG00000025967 148.59 1543.84 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
60. Nedd4 ENSMUSG00000032216 147.60 1533.55 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
61. Rps3a1 ENSMUSG00000028081 145.60 1512.77 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
62. Gm14303 ENSMUSG00000081344 144.60 1502.38 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
63. Cox8a ENSMUSG00000035885 143.61 1492.10 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
64. Trim28 ENSMUSG00000005566 142.61 1481.71 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
65. Paics ENSMUSG00000029247 137.62 1429.86 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
66. Rpl39-ps ENSMUSG00000036305 135.63 1409.18 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
67. Hba-a2 ENSMUSG00000069917 134.63 1398.79 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
68. Igf2 ENSMUSG00000048583 131.64 1367.73 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
69. Grb10 ENSMUSG00000020176 130.64 1357.34 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
70. Ywhab ENSMUSG00000018326 126.65 1315.88 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
71. Fkbp1a ENSMUSG00000032966 125.66 1305.60 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
72. Crabp1 ENSMUSG00000032291 124.66 1295.21 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
73. Rps4x ENSMUSG00000031320 122.66 1274.43 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
74. Tecr ENSMUSG00000031708 119.67 1243.36 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
75. Trp53i11 ENSMUSG00000068735 115.68 1201.91 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
76. Pcbp1 ENSMUSG00000051695 114.69 1191.62 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
77. Ndufa12 ENSMUSG00000020022 110.70 1150.16 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
78. Marcksl1 ENSMUSG00000047945 109.70 1139.77 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
79. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 109.70 1139.77 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
80. Fkbp4 ENSMUSG00000030357 107.71 1119.10 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
81. Ccnd2 ENSMUSG00000000184 106.71 1108.71 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
82. Ago2 ENSMUSG00000036698 102.72 1067.25 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
83. Anp32b ENSMUSG00000028333 102.72 1067.25 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
84. Gm5805 ENSMUSG00000061848 101.72 1056.86 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
85. Stmn1 ENSMUSG00000028832 100.72 1046.47 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
86. 2810417H13Rik 98.73 1025.80 RIKEN cDNA 2810417H13 gene
87. Fscn1 ENSMUSG00000029581 98.73 1025.80 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
88. Ncl ENSMUSG00000026234 98.73 1025.80 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
89. Rpl32 ENSMUSG00000057841 98.73 1025.80 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
90. Gm14586 ENSMUSG00000083621 95.74 994.73 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
91. Myl6 ENSMUSG00000090841 95.74 994.73 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
92. Tpm4 ENSMUSG00000031799 95.74 994.73 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
93. Cadm1 ENSMUSG00000032076 94.74 984.34 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
94. Top1 ENSMUSG00000070544 93.74 973.95 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
95. Ywhae ENSMUSG00000020849 93.74 973.95 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
96. H2afy ENSMUSG00000015937 92.75 963.66 H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]
97. Gm5963 ENSMUSG00000052192 91.75 953.27 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
98. Kpnb1 ENSMUSG00000001440 91.75 953.27 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
99. Lamp1 ENSMUSG00000031447 91.75 953.27 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
100. Malat1 ENSMUSG00000092341 91.75 953.27 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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