Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E10_5_slice_2, section s8.

Sample reads: 96,260. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3243.83 33699.11 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3174.09 32974.61 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2393.22 24862.40 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2065.00 21452.62 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1824.31 18952.17 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1617.81 16806.91 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Rnr2 ENSMUSG00000064339 1215.75 12630.04 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1066.69 11081.50 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Hbb-y ENSMUSG00000052187 1010.62 10499.01 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Nd2 ENSMUSG00000064345 671.47 6975.69 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Actb ENSMUSG00000029580 667.37 6933.09 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Eef1a1 ENSMUSG00000037742 642.75 6677.32 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. mt-Nd3 ENSMUSG00000064360 540.18 5611.76 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Rpsa ENSMUSG00000032518 536.08 5569.16 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Pkm ENSMUSG00000032294 451.29 4688.31 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
16. Cfl1 ENSMUSG00000056201 411.63 4276.29 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
17. mt-Nd5 ENSMUSG00000064367 399.33 4148.51 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. Tuba1b ENSMUSG00000023004 392.49 4077.45 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
19. Mdk ENSMUSG00000027239 388.38 4034.76 midkine [Source:MGI Symbol;Acc:MGI:96949]
20. Npm1 ENSMUSG00000057113 351.46 3651.21 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Gm13340 ENSMUSG00000083563 314.54 3267.66 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Hbb-bh1 ENSMUSG00000052217 309.07 3210.83 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
23. Hba-a1 ENSMUSG00000069919 298.13 3097.18 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
24. mt-Co3 ENSMUSG00000064358 289.92 3011.89 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
25. Hba-x ENSMUSG00000055609 285.82 2969.29 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
26. Hnrnpc ENSMUSG00000060373 283.08 2940.83 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
27. H19 ENSMUSG00000000031 268.04 2784.58 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
28. Set ENSMUSG00000054766 250.26 2599.87 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
29. mt-Rnr1 ENSMUSG00000064337 247.53 2571.51 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
30. Chchd2 ENSMUSG00000070493 244.79 2543.04 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Rps26 ENSMUSG00000025362 236.59 2457.86 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
32. Hsp90ab1 ENSMUSG00000023944 227.01 2358.33 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Eif5a ENSMUSG00000078812 222.91 2315.74 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
34. Eif4g2 ENSMUSG00000005610 221.54 2301.51 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Tubb5 ENSMUSG00000001525 221.54 2301.51 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
36. Rpl4 ENSMUSG00000032399 216.07 2244.68 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Tpt1 ENSMUSG00000060126 214.71 2230.55 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Rplp1 ENSMUSG00000007892 211.97 2202.09 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
39. Ran ENSMUSG00000029430 205.13 2131.03 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
40. Ybx1 ENSMUSG00000028639 199.66 2074.20 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
41. Rps20 ENSMUSG00000028234 196.93 2045.84 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
42. Tubb2b ENSMUSG00000045136 195.56 2031.61 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
43. Tmsb4x ENSMUSG00000049775 194.19 2017.38 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
44. Banf1 ENSMUSG00000024844 190.09 1974.78 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
45. Nedd4 ENSMUSG00000032216 190.09 1974.78 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
46. Rpl18a ENSMUSG00000045128 181.88 1889.49 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
47. Hmga2 ENSMUSG00000056758 179.15 1861.13 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
48. Hba-a2 ENSMUSG00000069917 177.78 1846.90 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
49. Ubb ENSMUSG00000019505 172.31 1790.07 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
50. Hsp90aa1 ENSMUSG00000021270 170.94 1775.84 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. Atp5g3 ENSMUSG00000018770 169.58 1761.71 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
52. Rpl37 ENSMUSG00000041841 168.21 1747.48 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
53. Rrm2 ENSMUSG00000020649 165.47 1719.01 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
54. Rps4x ENSMUSG00000031320 162.74 1690.65 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
55. U2af2 ENSMUSG00000030435 162.74 1690.65 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
56. Ldha ENSMUSG00000063229 161.37 1676.42 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
57. Rpl39-ps ENSMUSG00000036305 161.37 1676.42 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
58. Rps5 ENSMUSG00000012848 160.00 1662.19 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
59. Eef1b2 ENSMUSG00000025967 155.90 1619.60 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
60. Gm14303 ENSMUSG00000081344 155.90 1619.60 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
61. Gm10800 ENSMUSG00000075014 146.33 1520.18 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
62. Ndufa12 ENSMUSG00000020022 146.33 1520.18 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
63. Fkbp1a ENSMUSG00000032966 143.59 1491.71 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
64. Paics ENSMUSG00000029247 140.86 1463.35 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
65. Rpl32 ENSMUSG00000057841 139.49 1449.12 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
66. Ywhab ENSMUSG00000018326 139.49 1449.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
67. Rpl23 ENSMUSG00000071415 136.76 1420.76 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
68. Grb10 ENSMUSG00000020176 134.02 1392.29 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
69. Trp53i11 ENSMUSG00000068735 134.02 1392.29 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
70. 2810417H13Rik 128.55 1335.46 RIKEN cDNA 2810417H13 gene
71. Pcbp1 ENSMUSG00000051695 128.55 1335.46 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
72. Rpl8 ENSMUSG00000003970 128.55 1335.46 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
73. Gm14586 ENSMUSG00000083621 125.81 1307.00 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
74. Igf2 ENSMUSG00000048583 125.81 1307.00 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
75. Cox8a ENSMUSG00000035885 118.98 1236.05 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
76. Anp32b ENSMUSG00000028333 116.24 1207.58 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
77. Pabpc1 ENSMUSG00000022283 116.24 1207.58 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
78. Crabp1 ENSMUSG00000032291 114.87 1193.35 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
79. Marcksl1 ENSMUSG00000047945 108.04 1122.39 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
80. Ywhae ENSMUSG00000020849 108.04 1122.39 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
81. Lamp1 ENSMUSG00000031447 106.67 1108.16 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
82. Sub1 ENSMUSG00000022205 105.30 1093.93 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
83. Tecr ENSMUSG00000031708 105.30 1093.93 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
84. Rps3a1 ENSMUSG00000028081 103.93 1079.70 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
85. Prdx1 ENSMUSG00000028691 102.57 1065.57 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
86. Gm15459 ENSMUSG00000100801 98.46 1022.87 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
87. Ndufc2 ENSMUSG00000030647 97.10 1008.74 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
88. Trim28 ENSMUSG00000005566 97.10 1008.74 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
89. Ddx39b ENSMUSG00000019432 95.73 994.51 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
90. Gm10073 ENSMUSG00000060019 95.73 994.51 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
91. Gm9846 Gm9846 95.73 994.51
92. Rpl26 ENSMUSG00000060938 95.73 994.51 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
93. Hmgn1 ENSMUSG00000040681 94.36 980.28 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
94. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 92.99 966.04 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
95. Cdk4 ENSMUSG00000006728 91.63 951.91 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
96. Myl6 ENSMUSG00000090841 90.26 937.68 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
97. Ccnd2 ENSMUSG00000000184 88.89 923.45 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
98. Fscn1 ENSMUSG00000029581 88.89 923.45 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
99. Eef2 ENSMUSG00000034994 87.52 909.22 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
100. Gm8292 ENSMUSG00000100215 87.52 909.22 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA